View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16182_high_17 (Length: 238)
Name: NF16182_high_17
Description: NF16182
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16182_high_17 |
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| [»] chr8 (1 HSPs) |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 15 - 238
Target Start/End: Complemental strand, 35870190 - 35869967
Alignment:
| Q |
15 |
agaattcactgtgtttattaaatccaatgcctgagacaaaaatggagaaccagattccagtgtggtcttccaatgacgttgaaaaacctaacaaaagttc |
114 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35870190 |
agaattcactgtgtttattaaatccaatgcctgagacaaaaatggagaaccagattccagtgtggtcttccaatgacgttgaaaaacctaacaaaagttc |
35870091 |
T |
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| Q |
115 |
ttattttagcactaacagaccaggtccaaccattaagaaggtaaaaactaagtctttcttatttttctttacaatttcttgcattgcactccacccttca |
214 |
Q |
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| T |
35870090 |
ttattttagcactaacagaccaggtccaaccattaagaaggtaaaaactaagtctttcttatttttctttacaatttcttgcattgcactccacccttca |
35869991 |
T |
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| Q |
215 |
atagtcaatagtacctaccttacc |
238 |
Q |
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|||||||||||||||||||||||| |
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| T |
35869990 |
atagtcaatagtacctaccttacc |
35869967 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 15 - 238
Target Start/End: Complemental strand, 24444391 - 24444168
Alignment:
| Q |
15 |
agaattcactgtgtttattaaatccaatgcctgagacaaaaatggagaaccagattccagtgtggtcttccaatgacgttgaaaaacctaacaaaagttc |
114 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24444391 |
agaattcactgtgtttattaaatccaatgcctgagacaaaaatggagaaccagattccagtgtggtcttccaatgacgttgaaaaacctaacaaaagttc |
24444292 |
T |
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| Q |
115 |
ttattttagcactaacagaccaggtccaaccattaagaaggtaaaaactaagtctttcttatttttctttacaatttcttgcattgcactccacccttca |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24444291 |
ttattttagcactaacagaccaggtccaaccattaagaaggtaaaaactaagtctttcttatttttctttacaatttcttgcattgcactccacccttca |
24444192 |
T |
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| Q |
215 |
atagtcaatagtacctaccttacc |
238 |
Q |
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|||||||||||||||||||||||| |
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| T |
24444191 |
atagtcaatagtacctaccttacc |
24444168 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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