View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16182_high_20 (Length: 226)
Name: NF16182_high_20
Description: NF16182
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16182_high_20 |
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Alignment Details
Target: chr8 (Bit Score: 147; Significance: 1e-77; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 30 - 184
Target Start/End: Original strand, 30338532 - 30338686
Alignment:
| Q |
30 |
ggaacacagagcatgtgggttgtttgtttatgttcttcttcttctctgattgctatcaattaccccagctgatcaattgctatcaattattatcctcagg |
129 |
Q |
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| T |
30338532 |
ggaacacagagcatgtgggttgtttgtttatgttcttcttcttctctgattgctatcaattaccccagctgatcaattgctatcaattattatcctcagg |
30338631 |
T |
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| Q |
130 |
tcatttttcttctgaaaacaaacaactgatcaattgagtttgtttctgtttcttt |
184 |
Q |
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| T |
30338632 |
taatttttcttctgaaaacaaacaactgatcaattgagtttgtctctgtttcttt |
30338686 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 137; Significance: 1e-71; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 30 - 182
Target Start/End: Original strand, 23915581 - 23915733
Alignment:
| Q |
30 |
ggaacacagagcatgtgggttgtttgtttatgttcttcttcttctctgattgctatcaattaccccagctgatcaattgctatcaattattatcctcagg |
129 |
Q |
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| T |
23915581 |
ggaacacagagcatgtgggttgtttgtttctgttcttcttcttctccgattgctatcaattaccccaactgatcaattgctatcaattattatcctcagg |
23915680 |
T |
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| Q |
130 |
tcatttttcttctgaaaacaaacaactgatcaattgagtttgtttctgtttct |
182 |
Q |
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| T |
23915681 |
taatttttcttctgaaaacaaacaactgatcaattgagtttgtttctgtttct |
23915733 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 133; Significance: 3e-69; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 30 - 182
Target Start/End: Complemental strand, 18989941 - 18989789
Alignment:
| Q |
30 |
ggaacacagagcatgtgggttgtttgtttatgttcttcttcttctctgattgctatcaattaccccagctgatcaattgctatcaattattatcctcagg |
129 |
Q |
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||||||||||||||||||||||||||| | |||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
18989941 |
ggaacacagagcatgtgggttgtttgtgtctgttcttcttcttctccgattgctatcaattaccccaactgatcaattgctatcaattattatcctcagg |
18989842 |
T |
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| Q |
130 |
tcatttttcttctgaaaacaaacaactgatcaattgagtttgtttctgtttct |
182 |
Q |
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| T |
18989841 |
taatttttcttctgaaaacaaacaactgatcaattgagtttgtttctgtttct |
18989789 |
T |
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