View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16182_high_22 (Length: 212)
Name: NF16182_high_22
Description: NF16182
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16182_high_22 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 189; Significance: 1e-103; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 189; E-Value: 1e-103
Query Start/End: Original strand, 1 - 201
Target Start/End: Original strand, 12282867 - 12283067
Alignment:
| Q |
1 |
aagtttttgttgaacatgccattgcatgcaaggtcaattacgtttgaggtgcaatgcaagaagtttaaaagtgttcgtcctattggggtagcaagaattg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12282867 |
aagtttttgttgaacatgccattgcatgcaaggtcaattacgtttgaggtgcaatgcaagaagtttaaaagtgttcgtcctattggggtagcaagaattg |
12282966 |
T |
|
| Q |
101 |
gcgtttcagattttctcaatggtgctgtgccggaaaattgttcgcaaattttgagttataaattgagggattgggaagggaggcaaaatggagttattca |
200 |
Q |
| |
|
||||||| |||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12282967 |
gcgtttcggattttctcaatggcgccgtgccggaaaattgttcgcaaattttgagttataaattgagggattgggaagggaggcaaaatggagttattca |
12283066 |
T |
|
| Q |
201 |
t |
201 |
Q |
| |
|
| |
|
|
| T |
12283067 |
t |
12283067 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 177; E-Value: 1e-95
Query Start/End: Original strand, 1 - 201
Target Start/End: Original strand, 12267141 - 12267341
Alignment:
| Q |
1 |
aagtttttgttgaacatgccattgcatgcaaggtcaattacgtttgaggtgcaatgcaagaagtttaaaagtgttcgtcctattggggtagcaagaattg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12267141 |
aagtttttgttgaacatgccattgcatgcaaggtcaattacgtttgaggtgcaatgcaagaagtttaaaagtgttcgtcctattggggtagcaagaattg |
12267240 |
T |
|
| Q |
101 |
gcgtttcagattttctcaatggtgctgtgccggaaaattgttcgcaaattttgagttataaattgagggattgggaagggaggcaaaatggagttattca |
200 |
Q |
| |
|
||||||| |||||||| ||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
12267241 |
gcgtttcggattttcttaatggcaccgtgccggaaaattgttcgcaaattttgagttataaattgagggattgggaagggaggcaaaatggggttattca |
12267340 |
T |
|
| Q |
201 |
t |
201 |
Q |
| |
|
| |
|
|
| T |
12267341 |
t |
12267341 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 1 - 201
Target Start/End: Original strand, 12257047 - 12257247
Alignment:
| Q |
1 |
aagtttttgttgaacatgccattgcatgcaaggtcaattacgtttgaggtgcaatgcaagaagtttaaaagtgttcgtcctattggggtagcaagaattg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||| |||||||||||||| |||||||||| |
|
|
| T |
12257047 |
aagtttttgttgaacatgccattgcatgcaaggtcaatcacttttgaggtgcaatgcaagaagtttaaaagtgtacgtcctattggggtggcaagaattg |
12257146 |
T |
|
| Q |
101 |
gcgtttcagattttctcaatggtgctgtgccggaaaattgttcgcaaattttgagttataaattgagggattgggaagggaggcaaaatggagttattca |
200 |
Q |
| |
|
|||| |||||||||||||| | |||||||||||||| ||||||||||||||||||||||||| | ||||||||||||||||||||||||||||| |
|
|
| T |
12257147 |
ctctttcggattttctcaatggcatcgcgccggaaaattgtttgcaaattttgagttataaattgaggaactgggaagggaggcaaaatggagttattca |
12257246 |
T |
|
| Q |
201 |
t |
201 |
Q |
| |
|
| |
|
|
| T |
12257247 |
t |
12257247 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 1 - 201
Target Start/End: Original strand, 12264439 - 12264639
Alignment:
| Q |
1 |
aagtttttgttgaacatgccattgcatgcaaggtcaattacgtttgaggtgcaatgcaagaagtttaaaagtgttcgtcctattggggtagcaagaattg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||| |||||||||||||| |||||||||| |
|
|
| T |
12264439 |
aagtttttgttgaacatgccattgcatgcaaggtcaatcacttttgaggtgcaatgcaagaagtttaaaagtgtacgtcctattggggtggcaagaattg |
12264538 |
T |
|
| Q |
101 |
gcgtttcagattttctcaatggtgctgtgccggaaaattgttcgcaaattttgagttataaattgagggattgggaagggaggcaaaatggagttattca |
200 |
Q |
| |
|
|||| |||||||||||||| | |||||||||||||| ||||||||||||||||||||||||| | ||||||||||||||||||||||||||||| |
|
|
| T |
12264539 |
ctctttcggattttctcaatggcatcgcgccggaaaattgtttgcaaattttgagttataaattgaggaactgggaagggaggcaaaatggagttattca |
12264638 |
T |
|
| Q |
201 |
t |
201 |
Q |
| |
|
| |
|
|
| T |
12264639 |
t |
12264639 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 129; E-Value: 6e-67
Query Start/End: Original strand, 1 - 201
Target Start/End: Original strand, 12271051 - 12271251
Alignment:
| Q |
1 |
aagtttttgttgaacatgccattgcatgcaaggtcaattacgtttgaggtgcaatgcaagaagtttaaaagtgttcgtcctattggggtagcaagaattg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||| ||||||||||| |||||||| | |
|
|
| T |
12271051 |
aagtttttgttgaacatgccattgcatgcaaggtcaatcacgtttgaggtgcaatgcaagaagttcaaaagtgttcgccctattggggtggcaagaatcg |
12271150 |
T |
|
| Q |
101 |
gcgtttcagattttctcaatggtgctgtgccggaaaattgttcgcaaattttgagttataaattgagggattgggaagggaggcaaaatggagttattca |
200 |
Q |
| |
|
|||||| ||| |||| || || | || ||||||||||||| | |||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
12271151 |
ccgtttcggatattctaaacggggatgaatcggaaaattgttcacgaattttgagttataaattgaggaattgggaagggaggcaaaatggagttattca |
12271250 |
T |
|
| Q |
201 |
t |
201 |
Q |
| |
|
| |
|
|
| T |
12271251 |
t |
12271251 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 129; E-Value: 6e-67
Query Start/End: Original strand, 1 - 201
Target Start/End: Original strand, 12287717 - 12287917
Alignment:
| Q |
1 |
aagtttttgttgaacatgccattgcatgcaaggtcaattacgtttgaggtgcaatgcaagaagtttaaaagtgttcgtcctattggggtagcaagaattg |
100 |
Q |
| |
|
|||||||| || |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||| | |
|
|
| T |
12287717 |
aagtttttattaaacatgccattgcatgcaaggtcaatcacgtttgaggtgcaatgcaagaagtttaaaagtgttcgacctattggggtggcaagaatcg |
12287816 |
T |
|
| Q |
101 |
gcgtttcagattttctcaatggtgctgtgccggaaaattgttcgcaaattttgagttataaattgagggattgggaagggaggcaaaatggagttattca |
200 |
Q |
| |
|
|||||| ||| |||| || || |||| ||||||||||||| | ||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
12287817 |
ccgtttcggatattctaaacggggctgaatcggaaaattgttcacgaattttgagttataaattgagagattgggaagggaggcaaaatggagttattca |
12287916 |
T |
|
| Q |
201 |
t |
201 |
Q |
| |
|
| |
|
|
| T |
12287917 |
t |
12287917 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 105; Significance: 1e-52; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 1 - 201
Target Start/End: Original strand, 29197773 - 29197973
Alignment:
| Q |
1 |
aagtttttgttgaacatgccattgcatgcaaggtcaattacgtttgaggtgcaatgcaagaagtttaaaagtgttcgtcctattggggtagcaagaattg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||| ||||||||||| ||||||||||| || |||| | |
|
|
| T |
29197773 |
aagtttttgttgaacatgccattgcatgcaaggtcaatcacatttgaggtgcaatgcaagaagttcaaaagtgttcgccctattggggtgacacgaatcg |
29197872 |
T |
|
| Q |
101 |
gcgtttcagattttctcaatggtgctgtgccggaaaattgttcgcaaattttgagttataaattgagggattgggaagggaggcaaaatggagttattca |
200 |
Q |
| |
|
||||| ||| |||| || || |||| |||||||||||| | ||||||||||||||||||||| | ||||||||||||||||||||||||||||| |
|
|
| T |
29197873 |
ccgttttggatattctaaacggggctgaattggaaaattgttcccggattttgagttataaattgaggaactgggaagggaggcaaaatggagttattca |
29197972 |
T |
|
| Q |
201 |
t |
201 |
Q |
| |
|
| |
|
|
| T |
29197973 |
t |
29197973 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University