View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16182_high_23 (Length: 201)
Name: NF16182_high_23
Description: NF16182
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16182_high_23 |
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Alignment Details
Target: chr3 (Bit Score: 161; Significance: 4e-86; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 161; E-Value: 4e-86
Query Start/End: Original strand, 13 - 181
Target Start/End: Complemental strand, 39562384 - 39562216
Alignment:
| Q |
13 |
agcagagacacagactatattactgtaagcttgatgagtggtaggaaaattttgcaatgttttctaataatagttaatgtacattatcacaactagtgag |
112 |
Q |
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| T |
39562384 |
agcagagacacagactatattactgtaagcttgatgagtggtaggaaaattttgcaatgttttctaataataattaatgtacattatcacaactagtgag |
39562285 |
T |
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| Q |
113 |
tttaattagataagaatgccaactgagggttctagttttattcatggctgccaattgaggccagcattc |
181 |
Q |
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| T |
39562284 |
tttaattagataagaatgccaactgagggttctagttttattgatggctgccaattgaggccagcattc |
39562216 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 99; E-Value: 4e-49
Query Start/End: Original strand, 53 - 159
Target Start/End: Complemental strand, 39572532 - 39572426
Alignment:
| Q |
53 |
gtaggaaaattttgcaatgttttctaataatagttaatgtacattatcacaactagtgagtttaattagataagaatgccaactgagggttctagtttta |
152 |
Q |
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| T |
39572532 |
gtaggaaaattttgcaatgttttctaataataattaatgtacattatcacaactagtgagtttaattagataagaatgccaactgagggttctagtttta |
39572433 |
T |
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| Q |
153 |
ttcatgg |
159 |
Q |
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|| |||| |
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| T |
39572432 |
ttgatgg |
39572426 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 14 - 181
Target Start/End: Complemental strand, 39567060 - 39566895
Alignment:
| Q |
14 |
gcagagacacagactatattactgtaagcttgatgagtggtaggaaaattttgca-atgttttctaataatagttaatgtacattatcacaacta-gtga |
111 |
Q |
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||||||||||||||||||| ||||||||| |||||||||||||||||| | | |||||||| || ||| | |||||||||||| ||||||| |||| |
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| T |
39567060 |
gcagagacacagactatatatttgtaagcttaatgagtggtaggaaaattccgtacatgttttcaaa--ataat-aatgtacattattacaactaagtga |
39566964 |
T |
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| Q |
112 |
gtttaattagataagaatgccaactgagggttctagttttattcatggctgccaattgaggccagcattc |
181 |
Q |
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| T |
39566963 |
gtttaatcagataaaaatgccaactga-ggttctagctttattgatggctgtcaattgataccagcattc |
39566895 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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