View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16182_high_4 (Length: 454)
Name: NF16182_high_4
Description: NF16182
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16182_high_4 |
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Alignment Details
Target: chr1 (Bit Score: 408; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 408; E-Value: 0
Query Start/End: Original strand, 1 - 451
Target Start/End: Complemental strand, 10126771 - 10126320
Alignment:
| Q |
1 |
ttatggtaaaattagaggatttggatgttaaattttggtacatttggtgatctttaatagtttaagaagtcttgcatttataggataagaatttggcgtt |
100 |
Q |
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| T |
10126771 |
ttatggtaaaattagaggatttggatgttaaattttggtaaatttggtgatctttaatagtttaagaagtcttgcatttataggataagaatttggtgtt |
10126672 |
T |
|
| Q |
101 |
gtcaatc-cggaaactagttcagtcaaattcggctatgctacattatagccactatttgacaatatatactaaattgcatattgcagaacaataataatt |
199 |
Q |
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| T |
10126671 |
gtcaatcacggaaactagttcagtcaaattcggctatgctacattatagccactatttgacaatatatactaaattgcatattgcagaacaataataatt |
10126572 |
T |
|
| Q |
200 |
tgttcaaacgctgttctacaatataatgctgctatttattaacttggaatgtggaaataaatcatagatgaaaaccaaaatgttttacttttttgttcga |
299 |
Q |
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| T |
10126571 |
tgttcaaacgctgttctacaatataatgctgctatttattaacttggaatatggaaataaatcatagatgaaaaccaaaatgttttacttttttgttcga |
10126472 |
T |
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| Q |
300 |
gaaaagtactatttttggaagatattcaatccaatttttcaccagatctcaataatcgctaccttatctttcatcaaagattgataggcataatggttgc |
399 |
Q |
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|||| ||||||| |||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||| |
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| T |
10126471 |
gaaacgtactatgtttggaagatatccaatccaatttttcaccagatctcaataatcggtaccttatctttcatcaaagattgataggcataatgcttgc |
10126372 |
T |
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| Q |
400 |
attaaaactaaaatggatgttctgcagccgattttgtggttcttctctctcg |
451 |
Q |
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| T |
10126371 |
attaaaactaaaatggatgttctgcagccgattttgtggtttttctctctcg |
10126320 |
T |
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