View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16182_low_11 (Length: 286)
Name: NF16182_low_11
Description: NF16182
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16182_low_11 |
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Alignment Details
Target: chr1 (Bit Score: 152; Significance: 2e-80; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 1 - 274
Target Start/End: Complemental strand, 49690697 - 49690434
Alignment:
| Q |
1 |
aaagggtatttaagaaaaccaagacatccacaaacaaatgattctggacaatcatcactgtgtccatttcctttcctagttaagacaagtagcagtaaca |
100 |
Q |
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| T |
49690697 |
aaagggtatttaaaaaacccaagatttccacaaccaaatgagtctggacaatcaccactgtgtccatttcctttcctagttaagacaagtagcagtaaca |
49690598 |
T |
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| Q |
101 |
caattaaatgagagaacaaaaggaacctaaaatgtaaaacataaactaaagccattcaactgtgtgtgttaaacaatttgttccacacttgttaatttca |
200 |
Q |
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| T |
49690597 |
cagtcaaatgagagaacaaaaggaacctaaaatgtaaaacataaactaaagccattcaa----ttgtgttaaacaatttgttccacactt-ttaat---- |
49690507 |
T |
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| Q |
201 |
ttgcataaatataaatatatcctttaaatccaattgacacgctggttgacttggaaaatgagtaccacacaagt |
274 |
Q |
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| T |
49690506 |
ttgca-cgacataaatatattctttgaagcaaattgacacgctagttgacttggaaaatgagtaccacacaagt |
49690434 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 27 - 122
Target Start/End: Complemental strand, 49679044 - 49678949
Alignment:
| Q |
27 |
tccacaaacaaatgattctggacaatcatcactgtgtccatttcctttcctagttaagacaagtagcagtaacacaattaaatgagagaacaaaag |
122 |
Q |
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| T |
49679044 |
tccacaatcaaatgattctggacaatcatcactgtgtccatttcctttcctagttaagacaagtagcagtaacacaattaaatgagagaacaaaag |
49678949 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 27 - 122
Target Start/End: Complemental strand, 49686411 - 49686316
Alignment:
| Q |
27 |
tccacaaacaaatgattctggacaatcatcactgtgtccatttcctttcctagttaagacaagtagcagtaacacaattaaatgagagaacaaaag |
122 |
Q |
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| T |
49686411 |
tccacaatcaaatgattctggacaatcatcactgtgtccatttcctttactagttaagacaagtagcagtaacacagtcaaatgagagaacaaaag |
49686316 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 230 - 279
Target Start/End: Complemental strand, 49678820 - 49678771
Alignment:
| Q |
230 |
ccaattgacacgctggttgacttggaaaatgagtaccacacaagtattat |
279 |
Q |
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| T |
49678820 |
ccaattgacacgttagttgacttgtaaaatgagtaccacacaagtcttat |
49678771 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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