View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16182_low_13 (Length: 269)
Name: NF16182_low_13
Description: NF16182
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16182_low_13 |
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| [»] chr4 (8 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 240; Significance: 1e-133; HSPs: 8)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 22 - 269
Target Start/End: Complemental strand, 3751918 - 3751671
Alignment:
| Q |
22 |
tgttcgtccaatagaccgcaaattgttaagcctaaacaagaaagaaaaactaagtcatttcagattctattggcatgatatcttgagtgggaaaaatccc |
121 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3751918 |
tgttcgtccaatagaccgcaaattgttaagcctaaacaagaaagaaaaactaagtcatttcagattctattggcatgatatcttgagtgggaaaaatccc |
3751819 |
T |
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| Q |
122 |
actgcaattacaattgttccaccaacattgaagctaaacacaaccacttattttggttcagtcaacatgtttgatgaccctttgactataggaccacaat |
221 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3751818 |
actgcaattacaattgttccaccaccattgaagctaaacacaaccacttattttggttcagtcaacatgtttgatgaccctttgactataggaccacaat |
3751719 |
T |
|
| Q |
222 |
tgagttccaagcttgttggaaaagctcaaggtttctatgcatctgcat |
269 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
3751718 |
tgagttctaagcttgttggaaaagctcaaggtttctatgcatctgcat |
3751671 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 22 - 269
Target Start/End: Complemental strand, 3746101 - 3745854
Alignment:
| Q |
22 |
tgttcgtccaatagaccgcaaattgttaagcctaaacaagaaagaaaaactaagtcatttcagattctattggcatgatatcttgagtgggaaaaatccc |
121 |
Q |
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||||||| ||||||||| |||||||||| ||||||||| ||||||| ||||||||||||||||||| ||||||||| ||| ||||||| ||||| || |
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| T |
3746101 |
tgttcgttcaatagaccccaaattgttacacctaaacaaccaagaaaagctaagtcatttcagattcttttggcatgacatcatgagtggaaaaaaccct |
3746002 |
T |
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| Q |
122 |
actgcaattacaattgttccaccaacattgaagctaaacacaaccacttattttggttcagtcaacatgtttgatgaccctttgactataggaccacaat |
221 |
Q |
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||| |||||||| |||| |||| | ||||||||||||||||||| |||| |||||||| ||||||||| |||| ||||||| ||| |||||||| || |
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| T |
3746001 |
acttcaattacagttgtaccactaccattgaagctaaacacaactacttcttttggtttagtcaacattattgacaaccctttaactttaggaccaaaaa |
3745902 |
T |
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| Q |
222 |
tgagttccaagcttgttggaaaagctcaaggtttctatgcatctgcat |
269 |
Q |
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||||||| ||||||||||||||||||||||| || ||||||||||||| |
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| T |
3745901 |
tgagttctaagcttgttggaaaagctcaagggttgtatgcatctgcat |
3745854 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 22 - 267
Target Start/End: Complemental strand, 3781291 - 3781046
Alignment:
| Q |
22 |
tgttcgtccaatagaccgcaaattgttaagcctaaacaagaaagaaaaactaagtcatttcagattctattggcatgatatcttgagtgggaaaaatccc |
121 |
Q |
| |
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||||||||| ||||| |||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||| |||||||| |
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| T |
3781291 |
tgttcgtccgatagatcgcaaattgttaggcctaaacaagaaagaaaagctaagtcatttcagattctattggcatgacgtcttgagtggaaaaaatcca |
3781192 |
T |
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| Q |
122 |
actgcaattacaattgttccaccaacattgaagctaaacacaaccacttattttggttcagtcaacatgtttgatgaccctttgactataggaccacaat |
221 |
Q |
| |
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||| | || ||||| |||||||| ||| || ||||| ||||||| |||||||| || |||||| |||| ||||||| ||| |||||||| || |
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| T |
3781191 |
acttcggttgcaattattccaccatcatcaaaagtaaactcaaccaccgcttttggtttggttaacatgattgacaaccctttaactttaggaccagaac |
3781092 |
T |
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| Q |
222 |
tgagttccaagcttgttggaaaagctcaaggtttctatgcatctgc |
267 |
Q |
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||||||| ||||||||||||| ||||||||| |||||||||||||| |
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| T |
3781091 |
tgagttctaagcttgttggaagagctcaaggattctatgcatctgc |
3781046 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 22 - 269
Target Start/End: Complemental strand, 3755782 - 3755538
Alignment:
| Q |
22 |
tgttcgtccaatagaccgcaaattgttaagcctaaacaagaaagaaaaactaagtcatttcagattctattggcatgatatcttgagtgggaaaaatccc |
121 |
Q |
| |
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||||||||| |||||||||||||| ||||||||||| ||| |||||||||||||||||||||||||| ||||| || || ||||||| ||||| || |
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| T |
3755782 |
tgttcgtcctatagaccgcaaattattaagcctaaagaag---gaaaaactaagtcatttcagattctactggcacgacatagtgagtggaaaaaaccct |
3755686 |
T |
|
| Q |
122 |
actgcaattacaattgttccaccaacattgaagctaaacacaaccacttattttggttcagtcaacatgtttgatgaccctttgactataggaccacaat |
221 |
Q |
| |
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||| || || || |||| |||||| || |||| |||||| |||||||| |||||||||||| |||| | || ||||||| ||| |||||||||| | |
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| T |
3755685 |
acttcagttgcagttgtcccaccaccaatgaaactaaactcaaccactgcctttggttcagtccgcatgatcgacaaccctttaactttaggaccacagt |
3755586 |
T |
|
| Q |
222 |
tgagttccaagcttgttggaaaagctcaaggtttctatgcatctgcat |
269 |
Q |
| |
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||| ||| ||| ||||||||||||||||||| |||||||||||||||| |
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| T |
3755585 |
tgaattctaagattgttggaaaagctcaaggattctatgcatctgcat |
3755538 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 22 - 267
Target Start/End: Complemental strand, 3776978 - 3776733
Alignment:
| Q |
22 |
tgttcgtccaatagaccgcaaattgttaagcctaaacaagaaagaaaaactaagtcatttcagattctattggcatgatatcttgagtgggaaaaatccc |
121 |
Q |
| |
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||||||||||||||| ||||| |||||| ||||||||||||| ||||| ||||||||||||| ||| ||||||||||| || | ||||| |||||||| |
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| T |
3776978 |
tgttcgtccaatagatcgcaagttgttaggcctaaacaagaaggaaaagctaagtcatttcaaattatattggcatgacatagttagtggaaaaaatcca |
3776879 |
T |
|
| Q |
122 |
actgcaattacaattgttccaccaacattgaagctaaacacaaccacttattttggttcagtcaacatgtttgatgaccctttgactataggaccacaat |
221 |
Q |
| |
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||| | || |||||||||||||| ||| || ||||| ||||||||| |||||||| ||| | |||| |||| ||||||| ||| ||||||| ||| |
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| T |
3776878 |
acttcggttgcaattgttccaccatcatcaaaagtaaactcaaccactttttttggtttagttagcatgattgacaaccctttaactttaggacccgaat |
3776779 |
T |
|
| Q |
222 |
tgagttccaagcttgttggaaaagctcaaggtttctatgcatctgc |
267 |
Q |
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||||||| || |||||||| | ||||||||| |||||||||||||| |
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| T |
3776778 |
tgagttctaaacttgttggtagagctcaaggattctatgcatctgc |
3776733 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 22 - 269
Target Start/End: Complemental strand, 3762903 - 3762650
Alignment:
| Q |
22 |
tgttcgtccaatagaccgcaaattgttaagcctaaacaagaaagaaaaactaagtcatttcagattctattggcatgatatcttgagtgggaaaaatccc |
121 |
Q |
| |
|
||||||||||||||||||||| |||||| ||||||||||||| ||||||||||| ||||| |||||||| |||||||| || | ||||| || || || |
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| T |
3762903 |
tgttcgtccaatagaccgcaagttgttaggcctaaacaagaaggaaaaactaagccattttagattctactggcatgacatactaagtggaaataaccct |
3762804 |
T |
|
| Q |
122 |
actgcaattacaattgttccaccaacattgaagctaaacacaacc--actta----ttttggttcagtcaacatgtttgatgaccctttgactataggac |
215 |
Q |
| |
|
|| ||||||||||||||| |||| ||||||| ||| || ||||| |||| |||||||| |||| |||| |||| ||||||||||| |||||| |
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| T |
3762803 |
acaacaattacaattgttcaaccaccattgaaactacactcaaccggccttaatgcttttggtttagtccgcatgattgacaaccctttgactttaggac |
3762704 |
T |
|
| Q |
216 |
cacaattgagttccaagcttgttggaaaagctcaaggtttctatgcatctgcat |
269 |
Q |
| |
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| || ||||||| || |||||||||| ||||||||| |||||||||||||||| |
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| T |
3762703 |
ccgaactgagttctaaacttgttggaagagctcaaggattctatgcatctgcat |
3762650 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 22 - 261
Target Start/End: Complemental strand, 3771540 - 3771304
Alignment:
| Q |
22 |
tgttcgtccaatagaccgcaaattgttaagcctaaacaagaaagaaaaactaagtcatttcagattctattggcatgatatcttgagtgggaaaaatccc |
121 |
Q |
| |
|
||||||||| |||||||||||||| ||||||||||| ||| |||||||||||||||||||||||||| ||||| || || |||||| ||||| || |
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| T |
3771540 |
tgttcgtcctatagaccgcaaattattaagcctaaagaag---gaaaaactaagtcatttcagattctactggcacgagatagcgagtggaaaaaaccct |
3771444 |
T |
|
| Q |
122 |
actgcaattacaattgttccaccaacattgaagctaaacacaaccacttattttggttcagtcaacatgtttgatgaccctttgactataggaccacaat |
221 |
Q |
| |
|
|| | | | ||||||||||||| || |||| ||||||||||||||| ||||||||||||| |||| | || ||||||| ||| |||||||| || |
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| T |
3771443 |
ccttcggtaataattgttccaccaccaatgaaactaaacacaaccactgcttttggttcagtccgcatgatcgacaaccctttaactttaggaccagaac |
3771344 |
T |
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| Q |
222 |
tgagttccaagcttgttggaaaagctcaaggtttctatgc |
261 |
Q |
| |
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||||||| ||||||||||||||| ||||||| ||| |||| |
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| T |
3771343 |
tgagttctaagcttgttggaaaatctcaagggttcgatgc |
3771304 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 22 - 269
Target Start/End: Complemental strand, 3767307 - 3767066
Alignment:
| Q |
22 |
tgttcgtccaatagaccgcaaattgttaagcctaaacaagaaagaaaaactaagtcatttcagattctattggcatgatatcttgagtgggaaaaatccc |
121 |
Q |
| |
|
||||||||||||||| ||||| |||||| ||||||||||||| ||||| ||||||||||||| ||| ||||||||||| || ||||||| ||||| || |
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| T |
3767307 |
tgttcgtccaatagatcgcaagttgttaggcctaaacaagaaggaaaagctaagtcatttcaaattttattggcatgacatagtgagtggaaaaaaccct |
3767208 |
T |
|
| Q |
122 |
actgcaattacaattgttccaccaacattgaagctaaacacaaccacttattttggttcagtcaacatgtttgatgaccctttgactataggaccacaat |
221 |
Q |
| |
|
||| | || | || |||||||| ||| ||||| | | |||| |||||||||||| |||| | || ||||||| ||| |||||||||| | |
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| T |
3767207 |
acttctatcgtagttattccaccatcat------taaactccaacactgcctttggttcagtccgcatgatcgacaaccctttaactttaggaccacagt |
3767114 |
T |
|
| Q |
222 |
tgagttccaagcttgttggaaaagctcaaggtttctatgcatctgcat |
269 |
Q |
| |
|
||| ||| ||| ||||||||||||||||||| |||||||||||||||| |
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| T |
3767113 |
tgaattctaagattgttggaaaagctcaaggattctatgcatctgcat |
3767066 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 71 - 261
Target Start/End: Original strand, 25985274 - 25985461
Alignment:
| Q |
71 |
ctaagtcatttcagattctattggcatgatatcttgagtgggaaaaatcccactgcaattacaattgttccaccaacattgaagctaaacacaaccactt |
170 |
Q |
| |
|
||||| ||||| | ||||||||||||||| || | ||||| || || || || |||| |||||||||||||| | ||||| |||| |||||||| |
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| T |
25985274 |
ctaagccatttaaaattctattggcatgacatagttagtggaaacaacccttcttcaataccaattgttccaccacctttgaa---aaactcaaccactg |
25985370 |
T |
|
| Q |
171 |
attttggttcagtcaacatgtttgatgaccctttgactataggaccacaattgagttccaagcttgttggaaaagctcaaggtttctatgc |
261 |
Q |
| |
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|||||||| ||| |||||| |||| ||||||| || ||||||| |||||||||||||| | ||||||||||| ||||| |||||||| |
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| T |
25985371 |
cttttggtttagttaacatgattgagaaccctttaaccttaggacctcaattgagttccaaattggttggaaaagcacaaggattctatgc |
25985461 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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