View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16182_low_15 (Length: 258)
Name: NF16182_low_15
Description: NF16182
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16182_low_15 |
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Alignment Details
Target: chr4 (Bit Score: 224; Significance: 1e-123; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 18 - 245
Target Start/End: Complemental strand, 37292535 - 37292308
Alignment:
| Q |
18 |
ctaaaaatatgttatatggcacatgtgctcaagtgcaatgtaacaaaagtatgaaactaagcttaaattcatctaaaataaaagcacatatataatgtca |
117 |
Q |
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| T |
37292535 |
ctaaaaatatgttatatggaacatgtgctcaagtgcaatgtaacaaaagtatgaaactaagcttaaattcatctaaaataaaagcacatatataatgtca |
37292436 |
T |
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| Q |
118 |
aaaaatttaccttcatttcctccaaaagaggagagaatccaccaacaagggtcatgaaagtcagaactgaaacaagaaatgtgagcagagaacctctccc |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37292435 |
aaaaatttaccttcatttcctccaaaagaggagagaatccaccaacaagggtcatgaaagtcagaactgaaacaagaaatgtgagcagagaacctctccc |
37292336 |
T |
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| Q |
218 |
ctgaaacatgcatgaagatactatgatt |
245 |
Q |
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| T |
37292335 |
ctgaaacatgcatgaagatactatgatt |
37292308 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 120 - 187
Target Start/End: Complemental strand, 37300230 - 37300163
Alignment:
| Q |
120 |
aaatttaccttcatttcctccaaaagaggagagaatccaccaacaagggtcatgaaagtcagaactga |
187 |
Q |
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|||||||||||||||||||| | | ||||||||||||||||| || ||||||||||||| |||||| |
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| T |
37300230 |
aaatttaccttcatttcctcaatcaagggagagaatccaccaacgagtgtcatgaaagtcaaaactga |
37300163 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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