View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16182_low_16 (Length: 250)
Name: NF16182_low_16
Description: NF16182
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16182_low_16 |
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| [»] chr8 (1 HSPs) |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 12 - 250
Target Start/End: Original strand, 35869499 - 35869736
Alignment:
| Q |
12 |
atgaagagatcctacttatctgattaagttcacctgagtaagcattatacctctttgattcactagtccannnnnnncttgcttcataaatgtctggtga |
111 |
Q |
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| T |
35869499 |
atgaagagatcctacttatctgattcagttcacctgagtaagcattatacctctttgattcactagtccatttttttcttgcttcataaatgtctggtga |
35869598 |
T |
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| Q |
112 |
tgaagctccagaacttgatttacttttatgaatagcatcccaagcctgcaggaaaagttcatcattgtgagggtacataagttgaaatcatggttggtaa |
211 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
35869599 |
tgaagctccagaacttgatttacttttatgaatagcatcccaagcctgcaggaaaagttcatcattgtgagggtacataagttgaaatcatggttagtaa |
35869698 |
T |
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| Q |
212 |
aaaatgttgatttaaggcaatgtttggatacacagcttt |
250 |
Q |
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||||||||||||| |||||||||||||||||||| |||| |
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| T |
35869699 |
aaaatgttgattt-aggcaatgtttggatacacaacttt |
35869736 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 12 - 250
Target Start/End: Original strand, 24443700 - 24443937
Alignment:
| Q |
12 |
atgaagagatcctacttatctgattaagttcacctgagtaagcattatacctctttgattcactagtccannnnnnncttgcttcataaatgtctggtga |
111 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
24443700 |
atgaagagatcctacttatctgattcagttcacctgagtaagcattatacctctttgattcactagtccatttttttcttgcttcataaatgtctggtga |
24443799 |
T |
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| Q |
112 |
tgaagctccagaacttgatttacttttatgaatagcatcccaagcctgcaggaaaagttcatcattgtgagggtacataagttgaaatcatggttggtaa |
211 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
24443800 |
tgaagctccagaacttgatttacttttatgaatagcatcccaagcctgcaggaaaagttcatcattgtgagggtacataagttgaaatcatggttagtaa |
24443899 |
T |
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| Q |
212 |
aaaatgttgatttaaggcaatgtttggatacacagcttt |
250 |
Q |
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||||||||||||| |||||||||||||||||||| |||| |
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| T |
24443900 |
aaaatgttgattt-aggcaatgtttggatacacaacttt |
24443937 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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