View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16182_low_18 (Length: 241)
Name: NF16182_low_18
Description: NF16182
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16182_low_18 |
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Alignment Details
Target: chr1 (Bit Score: 177; Significance: 2e-95; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 1 - 205
Target Start/End: Original strand, 49690748 - 49690952
Alignment:
| Q |
1 |
ataatctcaacaaaactgctatgaagtatgtccagttaatcaaaagtggaaaactcttccaagttaaaaagattgataatcactggtccattggcaaccc |
100 |
Q |
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| T |
49690748 |
ataatctcaacaaaactgctatgaagtatgtccagttaaccaaaagaggaaaactcttccaagttaaaaagattgataatcactggtccattggcaacac |
49690847 |
T |
|
| Q |
101 |
tatttccattattgaccccaatatcaccaagcttttggagaaaaatgcttgtgaggcattcagccatgttaatattacactccctccttcctctcctttt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||| || |||||||| |
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| T |
49690848 |
tatttccattattgaccccaatatcaccaagcttttggagaaaaatgcttgtgaggcattcagctatgttaatattaccctccctcctcccactcctttt |
49690947 |
T |
|
| Q |
201 |
ggaac |
205 |
Q |
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||||| |
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| T |
49690948 |
ggaac |
49690952 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 1 - 205
Target Start/End: Original strand, 49679113 - 49679317
Alignment:
| Q |
1 |
ataatctcaacaaaactgctatgaagtatgtccagttaatcaaaagtggaaaactcttccaagttaaaaagattgataatcactggtccattggcaaccc |
100 |
Q |
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|||||||||||||||||||||||||| | |||||||||| |||| | ||||||||||| ||||||| ||| |||||||||| | |||||||||||||| | |
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| T |
49679113 |
ataatctcaacaaaactgctatgaagcacgtccagttaaccaaaggaggaaaactctttcaagttacaaacattgataatcgcgggtccattggcaacac |
49679212 |
T |
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| Q |
101 |
tatttccattattgaccccaatatcaccaagcttttggagaaaaatgcttgtgaggcattcagccatgttaatattacactccctccttcctctcctttt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
49679213 |
tatttccattattgaccccaatatcaccaagcttttggagaagaatgcttgtgaggcattcagccatgttaatattacactccttccttcctctcctttt |
49679312 |
T |
|
| Q |
201 |
ggaac |
205 |
Q |
| |
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||||| |
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| T |
49679313 |
ggaac |
49679317 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 95 - 205
Target Start/End: Original strand, 49686576 - 49686683
Alignment:
| Q |
95 |
caaccctatttccattattgaccccaatatcaccaagcttttggagaaaaatgcttgtgaggcattcagccatgttaatattacactccctccttcctct |
194 |
Q |
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|||| ||||||||||| |||| | ||| |||||||||||||| ||||||||||||| ||||| || ||| ||| |||| || ||||||||| ||||| |
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| T |
49686576 |
caacactatttccattgttgatctgaatttcaccaagcttttgcagaaaaatgcttgcgaggcctttagctatg---atatcactctccctcctccctct |
49686672 |
T |
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| Q |
195 |
ccttttggaac |
205 |
Q |
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||||||||||| |
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| T |
49686673 |
ccttttggaac |
49686683 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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