View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16182_low_21 (Length: 230)

Name: NF16182_low_21
Description: NF16182
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16182_low_21
NF16182_low_21
[»] chr4 (11 HSPs)
chr4 (1-230)||(3751417-3751646)
chr4 (8-230)||(3755291-3755513)
chr4 (8-225)||(3780797-3781014)
chr4 (8-224)||(3762403-3762619)
chr4 (8-225)||(3776484-3776701)
chr4 (12-230)||(3766823-3767041)
chr4 (88-230)||(3745687-3745829)
chr4 (10-230)||(3770596-3770804)
chr4 (21-226)||(3788959-3789163)
chr4 (8-43)||(3745613-3745648)
chr4 (81-223)||(3851416-3851558)
[»] chr7 (1 HSPs)
chr7 (67-230)||(25985494-25985657)


Alignment Details
Target: chr4 (Bit Score: 230; Significance: 1e-127; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 3751417 - 3751646
Alignment:
Q  1 aactaaaaatcaatagtgaaaaacataaacattgtactcaacaatagcatctccagttttgagatcaaaccaatgagtagtagctttagcatatcctcta 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3751417 aactaaaaatcaatagtgaaaaacataaacattgtactcaacaatagcatctccagttttgagatcaaaccaatgagtagtagctttagcatatcctcta 3751516  T
Q  101 gcaaatctgaaaagtccactaccaccaataataggcatctctctagccttattaataccagaattcctccccaagatagtaattgtactaccattatact 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3751517 gcaaatctgaaaagtccactaccaccaataataggcatctctctagccttattaataccagaattcctccccaagatagtaattgtactaccattatact 3751616  T
Q  201 ttccttcaatgaaagcaaagttcatagcca 230  Q
    ||||||||||||||||||||||||||||||    
T  3751617 ttccttcaatgaaagcaaagttcatagcca 3751646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 8 - 230
Target Start/End: Original strand, 3755291 - 3755513
Alignment:
Q  8 aatcaatagtgaaaaacataaacattgtactcaacaatagcatctccagttttgagatcaaaccaatgagtagtagctttagcatatcctctagcaaatc 107  Q
    |||||||||||||||||||||||||| ||||||||||||||||| |||| ||||| |||||||||||||||| |||||| |||||| |||||||||||||    
T  3755291 aatcaatagtgaaaaacataaacattatactcaacaatagcatccccagatttgatatcaaaccaatgagtattagcttcagcataacctctagcaaatc 3755390  T
Q  108 tgaaaagtccactaccaccaataataggcatctctctagccttattaataccagaattcctccccaagatagtaattgtactaccattatactttccttc 207  Q
    |||||| ||||||||||||||| | ||||||||||||| | |||| || | ||| |||||| ||||| ||||||| |||||| |||||||||||||||||    
T  3755391 tgaaaaatccactaccaccaatcacaggcatctctctaactttatgaaaaacagcattccttcccaatatagtaagtgtacttccattatactttccttc 3755490  T
Q  208 aatgaaagcaaagttcatagcca 230  Q
    | | |||||||| ||||||||||    
T  3755491 agtaaaagcaaaattcatagcca 3755513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 8 - 225
Target Start/End: Original strand, 3780797 - 3781014
Alignment:
Q  8 aatcaatagtgaaaaacataaacattgtactcaacaatagcatctccagttttgagatcaaaccaatgagtagtagctttagcatatcctctagcaaatc 107  Q
    ||||||||||||||||||| ||||||||||||||||  |||||| |||||||||| ||||| |||||||||| |||||| ||||||||||||||||||||    
T  3780797 aatcaatagtgaaaaacatgaacattgtactcaacacaagcatccccagttttgaaatcaatccaatgagtattagcttgagcatatcctctagcaaatc 3780896  T
Q  108 tgaaaagtccactaccaccaataataggcatctctctagccttattaataccagaattcctccccaagatagtaattgtactaccattatactttccttc 207  Q
    ||||||||||||||||||||| || ||||||||| ||| ||  ||||||  ||| ||||||||| | ||||||||  |||||||||||||||||||||||    
T  3780897 tgaaaagtccactaccaccaacaacaggcatctccctaaccaaattaatggcaggattcctccctacgatagtaagagtactaccattatactttccttc 3780996  T
Q  208 aatgaaagcaaagttcat 225  Q
    |||||||||||| |||||    
T  3780997 aatgaaagcaaaattcat 3781014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 129; E-Value: 6e-67
Query Start/End: Original strand, 8 - 224
Target Start/End: Original strand, 3762403 - 3762619
Alignment:
Q  8 aatcaatagtgaaaaacataaacattgtactcaacaatagcatctccagttttgagatcaaaccaatgagtagtagctttagcatatcctctagcaaatc 107  Q
    |||||||| |||||||||| || ||||||||||| |   ||||| |||| ||||||||||| ||||||||||||||||| ||||||||||||||||||||    
T  3762403 aatcaataatgaaaaacatgaagattgtactcaatacatgcatccccagatttgagatcaacccaatgagtagtagcttgagcatatcctctagcaaatc 3762502  T
Q  108 tgaaaagtccactaccaccaataataggcatctctctagccttattaataccagaattcctccccaagatagtaattgtactaccattatactttccttc 207  Q
    ||||||||||||| ||||||| || ||||||||| ||| ||||||||| | | | ||||||||||||||||||||| |||||||||||||||||||||||    
T  3762503 tgaaaagtccactgccaccaacaacaggcatctccctaaccttattaagagctggattcctccccaagatagtaatagtactaccattatactttccttc 3762602  T
Q  208 aatgaaagcaaagttca 224  Q
    |||||||||||| ||||    
T  3762603 aatgaaagcaaaattca 3762619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 8 - 225
Target Start/End: Original strand, 3776484 - 3776701
Alignment:
Q  8 aatcaatagtgaaaaacataaacattgtactcaacaatagcatctccagttttgagatcaaaccaatgagtagtagctttagcatatcctctagcaaatc 107  Q
    ||||||||||||||||| | ||||||||||||||||  |||||| |||| ||||  ||||| ||||||||||||||||| |||||| |||||||||||||    
T  3776484 aatcaatagtgaaaaacgtgaacattgtactcaacacaagcatccccagctttggcatcaatccaatgagtagtagcttcagcataacctctagcaaatc 3776583  T
Q  108 tgaaaagtccactaccaccaataataggcatctctctagccttattaataccagaattcctccccaagatagtaattgtactaccattatactttccttc 207  Q
    ||||||||||||||||||||| || |||||| || ||| ||||||||  | ||  ||||||||||||||||||||| |||||||||||||||||||||||    
T  3776584 tgaaaagtccactaccaccaacaacaggcatttccctaaccttattacgagcatgattcctccccaagatagtaatggtactaccattatactttccttc 3776683  T
Q  208 aatgaaagcaaagttcat 225  Q
    |||||||||||| |||||    
T  3776684 aatgaaagcaaaattcat 3776701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 12 - 230
Target Start/End: Original strand, 3766823 - 3767041
Alignment:
Q  12 aatagtgaaaaacataaacattgtactcaacaatagcatctccagttttgagatcaaaccaatgagtagtagctttagcatatcctctagcaaatctgaa 111  Q
    ||||||||||||||| ||||||||||||||||  ||||||  ||| ||||| ||||| | |||||||| |||||| |||||| |||||||||||||||||    
T  3766823 aatagtgaaaaacatgaacattgtactcaacacaagcatcctcagatttgaaatcaatcgaatgagtattagcttcagcataacctctagcaaatctgaa 3766922  T
Q  112 aagtccactaccaccaataataggcatctctctagccttattaataccagaattcctccccaagatagtaattgtactaccattatactttccttcaatg 211  Q
    || ||||||||||||||| | ||||||||||||| | |||| || | ||| |||||| ||||| ||||||| |||||| |||||||||||||||||| |     
T  3766923 aactccactaccaccaatcacaggcatctctctaactttatgaaaaacagcattccttcccaatatagtaagtgtacttccattatactttccttcagta 3767022  T
Q  212 aaagcaaagttcatagcca 230  Q
    |||||||| ||||||||||    
T  3767023 aaagcaaaattcatagcca 3767041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 88 - 230
Target Start/End: Original strand, 3745687 - 3745829
Alignment:
Q  88 agcatatcctctagcaaatctgaaaagtccactaccaccaataataggcatctctctagccttattaataccagaattcctccccaagatagtaattgta 187  Q
    |||||| ||||| |||||||| ||| ||||  ||||||||| ||||||||| || ||| ||||||||| | ||||||| ||||||||||||||||| |||    
T  3745687 agcatagcctcttgcaaatctaaaacgtccggtaccaccaacaataggcatttccctaaccttattaagagcagaatttctccccaagatagtaatagta 3745786  T
Q  188 ctaccattatactttccttcaatgaaagcaaagttcatagcca 230  Q
    || |||||||||||||||||||||||||||||  |||||||||    
T  3745787 ctcccattatactttccttcaatgaaagcaaaagtcatagcca 3745829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 10 - 230
Target Start/End: Original strand, 3770596 - 3770804
Alignment:
Q  10 tcaatagtgaaaaacataaacattgtactcaacaatagcatctccagttttgagatcaaaccaatgagtagtagctttagcatatcctctagcaaatctg 109  Q
    |||||| || |||||||||||||| ||||| |||| |||||| |||| ||||| |||||||||||||||| |||||| ||||            ||||||    
T  3770596 tcaataatggaaaacataaacattatactcgacaacagcatccccagatttgatatcaaaccaatgagtattagcttcagca------------aatctg 3770683  T
Q  110 aaaagtccactaccaccaataataggcatctctctagccttattaataccagaattcctccccaagatagtaattgtactaccattatactttccttcaa 209  Q
    ||||||||| |||||||||| ||||||||||||| | | |||| || | ||  |||||| ||||| ||||||| | |||| ||||||||||||||||||     
T  3770684 aaaagtccaataccaccaatcataggcatctctcaaactttatgaaaaacaacattccttcccaaaatagtaagtttacttccattatactttccttcag 3770783  T
Q  210 tgaaagcaaagttcatagcca 230  Q
    | ||| |||| ||||||||||    
T  3770784 taaaaacaaaattcatagcca 3770804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 21 - 226
Target Start/End: Original strand, 3788959 - 3789163
Alignment:
Q  21 aaacataaacattgtactcaacaatagcatctccagttttgagatcaaaccaatgagtagtagctttagcatatcctctagcaaatctgaaaagtccact 120  Q
    |||||||||||||||||||||   |||||||||| || ||| ||||| |  | | |||| |||||| |||||||||  ||||||| || |||| ||||||    
T  3788959 aaacataaacattgtactcaattgtagcatctcctgtgttgggatcagaagagtaagtactagcttcagcatatcccttagcaaacctaaaaactccact 3789058  T
Q  121 accaccaataataggcatctctctagccttattaataccagaattcctccccaagatagtaattgtactaccattatactttccttcaatgaaagcaaag 220  Q
     |||||||| | |||||| |||||| |||||||  || ||  |||| |||  || |||||||| || || |||||||||||||||||||  |||||||||    
T  3789059 tccaccaatcacaggcatttctctaaccttattgttagcaacattcttcctgaa-atagtaatggtgcttccattatactttccttcaaacaaagcaaag 3789157  T
Q  221 ttcata 226  Q
    ||||||    
T  3789158 ttcata 3789163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 8 - 43
Target Start/End: Original strand, 3745613 - 3745648
Alignment:
Q  8 aatcaatagtgaaaaacataaacattgtactcaaca 43  Q
    |||||||||| |||||||||||||||||||||||||    
T  3745613 aatcaatagtaaaaaacataaacattgtactcaaca 3745648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 81 - 223
Target Start/End: Original strand, 3851416 - 3851558
Alignment:
Q  81 tagctttagcatatcctctagcaaatctgaaaagtccactaccaccaataataggcatctctctagccttattaataccagaattcctccccaagatagt 180  Q
    |||||| |||||||||  ||||||||| ||||| ||| |||||||| || | ||||| ||||||| ||||||   |  |    ||||| ||  |||||||    
T  3851416 tagcttcagcatatcccttagcaaatcggaaaactccgctaccaccgatcacaggcaactctctaaccttatcgttcgcgacgttccttccagagatagt 3851515  T
Q  181 aattgtactaccattatactttccttcaatgaaagcaaagttc 223  Q
    ||| ||||| |||||||||||||||||||  || |||||||||    
T  3851516 aatggtactcccattatactttccttcaaacaaggcaaagttc 3851558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 64; Significance: 4e-28; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 67 - 230
Target Start/End: Complemental strand, 25985657 - 25985494
Alignment:
Q  67 aaaccaatgagtagtagctttagcatatcctctagcaaatctgaaaagtccactaccaccaataataggcatctctctagccttattaataccagaattc 166  Q
    ||||||||||||  ||  || |||||||||||||||||||| |||||| |||||||||||||| |||||||| || ||| |||||| |  | ||| ||||    
T  25985657 aaaccaatgagttctaagttgagcatatcctctagcaaatcggaaaagaccactaccaccaattataggcatttccctaaccttatcagaaacaggattc 25985558  T
Q  167 ctccccaagatagtaattgtactaccattatactttccttcaatgaaagcaaagttcatagcca 230  Q
    |||||||| ||||| || || |||||||| ||||| |||||||| | |||||| ||||||||||    
T  25985557 ctccccaaaatagtgatggtgctaccattgtacttcccttcaattatagcaaaattcatagcca 25985494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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