View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16182_low_3 (Length: 456)
Name: NF16182_low_3
Description: NF16182
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16182_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 300; Significance: 1e-168; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 22 - 325
Target Start/End: Complemental strand, 50505985 - 50505682
Alignment:
| Q |
22 |
acgagtaactagtgacacaaagaaagctacaattatatgtagtatgaatcatagaagattgactaggtacagcatactgtatttcagaattttctttaaa |
121 |
Q |
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| T |
50505985 |
acgagtaactagtgacacaaagaaagctacaattatatgtagtatgaatcatagaagattgactaggtacagcatactgtatttcagaattttctttaaa |
50505886 |
T |
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| Q |
122 |
atttaagcatatcaaacctgcttaagcatatcaaaaccgcttaacaactagactgaaacgcttgccttgattagggactatgagaatttaagagagcgca |
221 |
Q |
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| T |
50505885 |
atttaagcatatcaaacctgcttaagcatatcaaaaccgcttaacaactagactgaaacgcttgccttgattagggactatgagaatttaagagagcgca |
50505786 |
T |
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| Q |
222 |
taactgaatgaagaaaccaaatataaacttgcccagcaacacacatcaatcactatcatacacgaacctaaaaatcaccgatatagtttatgcaatggtt |
321 |
Q |
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| T |
50505785 |
taactaaatgaagaaaccaaatataaacttgcccagcaacacacatcaatcactatcatacacgaacctaaaaatcaccgatatagtttatgcaatggtt |
50505686 |
T |
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| Q |
322 |
ttaa |
325 |
Q |
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|||| |
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| T |
50505685 |
ttaa |
50505682 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 321 - 449
Target Start/End: Complemental strand, 50505649 - 50505521
Alignment:
| Q |
321 |
tttaaaagtccgctgttatgcaatggtttcatcatgttttagataatgatttctatattccccatgaagccatgatatgttagtattttgtttagcttgt |
420 |
Q |
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| T |
50505649 |
tttaaaagtccgctgttatgcaatggtttcatcatgttttagataatgatttctatattccccatgaagccatgatatgttagtattttgtttagcttgt |
50505550 |
T |
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| Q |
421 |
atttttcttatcagataatgcctttgctt |
449 |
Q |
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| T |
50505549 |
atttttcttatcagataatgcctttgctt |
50505521 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 122; Significance: 2e-62; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 143 - 323
Target Start/End: Original strand, 28733378 - 28733556
Alignment:
| Q |
143 |
ttaagcatatcaaaaccgcttaacaactagactgaaacgcttgccttgattagggactatgagaatttaagagagcgcataactgaatgaagaaaccaaa |
242 |
Q |
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||||||||||||||||||||||||||||||| |||| |||||||||||||| ||||||||||||||||||||| | ||||||| |||||||| |||||| |
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| T |
28733378 |
ttaagcatatcaaaaccgcttaacaactagaaagaaatgcttgccttgattaaggactatgagaatttaagagaacacataactaaatgaagagaccaaa |
28733477 |
T |
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| Q |
243 |
tataaacttgcccagcaacacacatcaatcactatcatacacgaacctaaaaatcaccgatatagtttatgcaatggtttt |
323 |
Q |
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| T |
28733478 |
tataaa--tgcctagcaacatacatcaatcactatcatgcacgaacctaaaaatcaccaatatagtttatgcaatggtttt |
28733556 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 347 - 446
Target Start/End: Original strand, 28733612 - 28733711
Alignment:
| Q |
347 |
tttcatcatgttttagataatgatttctatattccccatgaagccatgatatgttagtattttgtttagcttgtatttttcttatcagataatgcctttg |
446 |
Q |
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||||||||| |||||||||||||||| |||||||||||||| ||||||||||||||||||||||||| |||| ||||||||||||||||||||| ||||| |
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| T |
28733612 |
tttcatcatattttagataatgatttatatattccccatgaggccatgatatgttagtattttgttttgcttatatttttcttatcagataatgtctttg |
28733711 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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