View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16182_low_4 (Length: 455)
Name: NF16182_low_4
Description: NF16182
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16182_low_4 |
 | |
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Alignment Details
Target: chr2 (Bit Score: 412; Significance: 0; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 412; E-Value: 0
Query Start/End: Original strand, 16 - 439
Target Start/End: Original strand, 43224077 - 43224500
Alignment:
| Q |
16 |
atgtagacctgcatgagaagagcatccatgtcagctctaagagcgacaaaaggaggaagaccagttcctatgtaagcaataacacctgtcactgcaactg |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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|
| T |
43224077 |
atgtagacctgcatgagaagagcatccatgtcagctctaagagcgacaaaaggaggaagaccagttcctatgtaaccaataacacctgtcactgcaactg |
43224176 |
T |
|
| Q |
116 |
gatgtttatattgaacacttaattcatccaattctgttcttataagcttactggtctcaaattcctcataaccaagttcaggattctcatgaatcttcct |
215 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43224177 |
gatgtttatattgaacacctaattcatccaattctgttcttataagcttactggtctcaaattcctcataaccaagttcaggattctcatgaatcttcct |
43224276 |
T |
|
| Q |
216 |
ccttatatcaaccatccaatcaaaaacttgaggttccttggctaattccaggaaattggggattgcgtttgaactggaggaagaatctgagaagattggt |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
43224277 |
ccttatatcaaccatccaatcaaaaacttgaggttccttggctaattccaggaaattggggattgcgtttgaactggaggaagaatctgagaagattggt |
43224376 |
T |
|
| Q |
316 |
gtagcagataaaaaggaaatgaacatgatgatgaacaacttaacacatttgaagaaatccatgaatgcattcaaagtgttggaggaatgaaaaagaagct |
415 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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|
| T |
43224377 |
gtagcagataaaaaggaaatgaacatgatgatgaacaacttaacacatttgaagaaatccatgaatgctttcaaagtgttggaggaatgaaaaagaagct |
43224476 |
T |
|
| Q |
416 |
aaactaaattttggaacaacaaat |
439 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
43224477 |
aaactaaattttggaacaacaaat |
43224500 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 22 - 423
Target Start/End: Complemental strand, 41654815 - 41654414
Alignment:
| Q |
22 |
acctgcatgagaagagcatccatgtcagctctaagagcgacaaaaggaggaagaccagttcctatgtaagcaataacacctgtcactgcaactggatgtt |
121 |
Q |
| |
|
|||||||| |||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
41654815 |
acctgcataagaagagcatccatttcagctctgagagcgacaaaaggaggaagaccagttcctatgtaaccaataacacctgtcactgcaactggatgtt |
41654716 |
T |
|
| Q |
122 |
tatattgaacacttaattcatccaattctgttcttataagcttactggtctcaaattcctcataaccaagttcaggattctcatgaatcttcctccttat |
221 |
Q |
| |
|
||||| ||||| ||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41654715 |
tatatgtaacacccaattcatccaattttgttcttataagcttactggtctcaaattcttcataaccaagttcaggattctcatgaatcttcctccttat |
41654616 |
T |
|
| Q |
222 |
atcaaccatccaatcaaaaacttgaggttccttggctaattccaggaaattggggattgcgtttgaactggaggaagaatctgagaagattggtgtagca |
321 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||| |||||| ||||||||||||||||||||| |
|
|
| T |
41654615 |
atcaaccatccaatcaaaaacttgaggttccttggctaattccaggaagttggggattgcatttgaactggtggaagagtctgagaagattggtgtagca |
41654516 |
T |
|
| Q |
322 |
gataaaaaggaaatgaacatgatgatgaacaacttaacacatttgaagaaatccatgaatgcattcaaagtgttggaggaatgaaaaagaagctaaacta |
421 |
Q |
| |
|
||||||||||||||||| |||| |||||||||||| |||||||||||||||||||||||| | ||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
41654515 |
gataaaaaggaaatgaaaatgacgatgaacaacttgacacatttgaagaaatccatgaattctttcaaagtgttggagaaatgaaaaagaagctaaacta |
41654416 |
T |
|
| Q |
422 |
aa |
423 |
Q |
| |
|
|| |
|
|
| T |
41654415 |
aa |
41654414 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 22 - 382
Target Start/End: Original strand, 43213348 - 43213720
Alignment:
| Q |
22 |
acctgcatgagaagagcatccatgtcagctctaagagcgacaaaaggaggaagaccagttcctatgtaagcaataacacctgtcactgcaactggatgtt |
121 |
Q |
| |
|
|||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||| |
|
|
| T |
43213348 |
acctgcataagaagagcatccatctcagctctaagagcgacaaaaggaggaagaccagttcctatgtaaccaataacacctgtcactacaactggatgtt |
43213447 |
T |
|
| Q |
122 |
tatattgaacacttaattcatccaattctgttcttataagcttactggtctcaaattcctcataaccaagttcaggattctcatgaatcttcctccttat |
221 |
Q |
| |
|
||||| | |||| ||||||||| |||| ||||||||||||||||||||| |||||||| |||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
43213448 |
tatatgggacacctaattcatctaattttgttcttataagcttactggtttcaaattcttcataaccaacttcaggattctcatgaatcttcctccttat |
43213547 |
T |
|
| Q |
222 |
atcaaccatccaatcaaaaacttgaggttccttggctaattccaggaaattggggattg---------cgtttga---actggaggaagaatctgagaag |
309 |
Q |
| |
|
||||||||||||||||||||||||||| || |||||||||||||| | || || |||| | ||||| | ||||||| ||||||||||| |
|
|
| T |
43213548 |
atcaaccatccaatcaaaaacttgaggctctttggctaattccagaagctttggaattgctaagtggtcttttgaattagtggaggaggaatctgagaaa |
43213647 |
T |
|
| Q |
310 |
attggtgtagcagataaaaaggaaatgaacatgatgatgaacaacttaacacatttgaagaaatccatgaatg |
382 |
Q |
| |
|
|| ||||| ||| |||||||| ||||||| |||||||| |||| || ||||||||||||||| ||||||||| |
|
|
| T |
43213648 |
ataggtgttgcacataaaaagaaaatgaaaatgatgatcaacatgttgacacatttgaagaaagccatgaatg |
43213720 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 20 - 396
Target Start/End: Original strand, 43227882 - 43228277
Alignment:
| Q |
20 |
agacctgcatgagaagagcatccatgtcagctctaagagcgacaaaaggaggaagaccagttcctatgtaagcaataacacctgtcactgcaactggatg |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||| |
|
|
| T |
43227882 |
agacctgcatgagaagagcatccatgtcagctctaagagcaacaaaaggaggaagaccagttcctatgtaaccaataacacctgtaactgcaactggatg |
43227981 |
T |
|
| Q |
120 |
tttatattgaacacttaattcatccaattctgttcttataagcttactggtctcaaattcctcataaccaagttcaggattctcatgaatcttcctcctt |
219 |
Q |
| |
|
|||||||||||||| || |||||||||| |||||||||||||||||| ||||||||||| | ||||| |||||||||||||||||||| || |||||| |
|
|
| T |
43227982 |
tttatattgaacacccaactcatccaattttgttcttataagcttactagtctcaaattcttgataactcagttcaggattctcatgaatttttctcctt |
43228081 |
T |
|
| Q |
220 |
atatcaaccatccaatcaaaaacttgaggttccttggctaattccaggaaattggggattg---------cgtttgaact------ggaggaagaatctg |
304 |
Q |
| |
|
||| ||||||||| |||||||||| ||| || || ||||| || || || || ||||||| | |||||| | |||||| ||||||| |
|
|
| T |
43228082 |
atagaaaccatccagtcaaaaactttaggctctttagctaaatctagaaagtttgggattgataagtggtcatttgaagtggtggaggaggaggaatctg |
43228181 |
T |
|
| Q |
305 |
agaagattggtgtagcagataaaaaggaaatgaacatgatgatgaacaacttaacacatttgaagaaatccatga----atgcattcaaagtgttg |
396 |
Q |
| |
|
||||||||| ||| |||||||||||| ||||||| ||||||||||||| || | |||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
43228182 |
agaagattgatgttgcagataaaaagaaaatgaaaatgatgatgaacatgttgaaacatttgaagaaatccatgaatacatgcattcaaagtgttg |
43228277 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 22 - 382
Target Start/End: Complemental strand, 41650275 - 41649903
Alignment:
| Q |
22 |
acctgcatgagaagagcatccatgtcagctctaagagcgacaaaaggaggaagaccagttcctatgtaagcaataacacctgtcactgcaactggatgtt |
121 |
Q |
| |
|
||||||||||||||||||||||| |||||||| ||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
41650275 |
acctgcatgagaagagcatccatatcagctctgagagctacaaaaggaggaagaccagttcctatgtaaccaataacacctgtcactgcaactggatgtt |
41650176 |
T |
|
| Q |
122 |
tatattgaacacttaattcatccaattctgttcttataagcttactggtctcaaattcctcataaccaagttcaggattctcatgaatcttcctccttat |
221 |
Q |
| |
|
||||| | |||| |||||||||||||| ||||| |||||||||||| || | |||||| | ||||| |||||||||||||||||||| || |||||||| |
|
|
| T |
41650175 |
tatatgggacacctaattcatccaattttgttcgtataagcttactagttttaaattcttgataactcagttcaggattctcatgaatttttctccttat |
41650076 |
T |
|
| Q |
222 |
atcaaccatccaatcaaaaacttgaggttccttggctaattccaggaaattggggattg---------cgtttgaa---ctggaggaagaatctgagaag |
309 |
Q |
| |
|
||||||||| |||||||||||||||||||||||| ||| | || || || ||||||| | |||||| ||||||| |||||||||||| |
|
|
| T |
41650075 |
atcaaccatgaaatcaaaaacttgaggttccttggataaatttagaaagtttgggattgataagtggtcatttgaagtggtggaggaggaatctgagaag |
41649976 |
T |
|
| Q |
310 |
attggtgtagcagataaaaaggaaatgaacatgatgatgaacaacttaacacatttgaagaaatccatgaatg |
382 |
Q |
| |
|
|||||||| |||||| ||||| ||||||| ||||||||||||| || | | ||||||||||||||||||||| |
|
|
| T |
41649975 |
attggtgttgcagatgaaaagaaaatgaaaatgatgatgaacatgttgaaatatttgaagaaatccatgaatg |
41649903 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 148; E-Value: 6e-78
Query Start/End: Original strand, 18 - 348
Target Start/End: Original strand, 43206370 - 43206709
Alignment:
| Q |
18 |
gtagacctgcatgagaagagcatccatgtcagctctaagagcgacaaaaggaggaagaccagttcctatgtaagcaataacacctgtcactgcaactgga |
117 |
Q |
| |
|
||||||||| || |||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||| |||||||||||| |
|
|
| T |
43206370 |
gtagacctgaataagaagagcatccatatcagctctaagagcaacaaaaggaggaagaccagttcctatgtaaccaataacacctgtaactgcaactgga |
43206469 |
T |
|
| Q |
118 |
tgtttatattgaacacttaattcatccaattctgttcttataagcttactggtctcaaattcctcataaccaagttcaggattctcatgaatcttcctcc |
217 |
Q |
| |
|
|||||||||||||||| || |||||||||| |||||||||||||||||| ||||||||||| | ||||| |||||||||||||||||||| || |||| |
|
|
| T |
43206470 |
tgtttatattgaacacccaactcatccaattttgttcttataagcttactagtctcaaattcttgataactcagttcaggattctcatgaatttttctcc |
43206569 |
T |
|
| Q |
218 |
ttatatcaaccatccaatcaaaaacttgaggttccttggctaattccaggaaattggggattg---------cgtttgaactggaggaagaatctgagaa |
308 |
Q |
| |
|
||||| ||||||||| |||||||||| ||| || || ||||| || || || || ||||||| | |||||| |||| || | |||||||| |
|
|
| T |
43206570 |
ttatagaaaccatccagtcaaaaactttaggctctttagctaaatctagaaagtttgggattgataagtggtcatttgaagtggaagagaagtctgagaa |
43206669 |
T |
|
| Q |
309 |
gattggtgtagcagataaaaaggaaatgaacatgatgatg |
348 |
Q |
| |
|
|| |||||| ||||| |||||| ||||||| ||||||||| |
|
|
| T |
43206670 |
gactggtgttgcagagaaaaagaaaatgaaaatgatgatg |
43206709 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 66; Significance: 5e-29; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 33 - 242
Target Start/End: Original strand, 5073627 - 5073836
Alignment:
| Q |
33 |
aagagcatccatgtcagctctaagagcgacaaaaggaggaagaccagttcctatgtaagcaataacacctgtcactgcaactggatgtttatattgaaca |
132 |
Q |
| |
|
|||||||||||| |||||||| | ||| |||||||||| | |||||||||||| || |||| ||||| || | ||||||||||| |||||| ||| | |
|
|
| T |
5073627 |
aagagcatccatatcagctcttaaagcaacaaaaggagacaatccagttcctatgaaaccaatgacaccagtgattgcaactggatatttatagggaata |
5073726 |
T |
|
| Q |
133 |
cttaattcatccaattctgttcttataagcttactggtctcaaattcctcataaccaagttcaggattctcatgaatcttcctccttatatcaaccatcc |
232 |
Q |
| |
|
|| | || |||||||||||||||||| | | ||| |||||||||||||||||||| | ||| |||||||||||||| ||||| || |||| | ||||| |
|
|
| T |
5073727 |
ctcagtttatccaattctgttcttatcaattcacttgtctcaaattcctcataacccaattctggattctcatgaattttccttctgatattgatcatcc |
5073826 |
T |
|
| Q |
233 |
aatcaaaaac |
242 |
Q |
| |
|
||||| |||| |
|
|
| T |
5073827 |
aatcataaac |
5073836 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 36 - 70
Target Start/End: Original strand, 31839458 - 31839492
Alignment:
| Q |
36 |
agcatccatgtcagctctaagagcgacaaaaggag |
70 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||| |
|
|
| T |
31839458 |
agcatccatgtcagctctaagagcaacaaaaggag |
31839492 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 36 - 73
Target Start/End: Complemental strand, 26262888 - 26262851
Alignment:
| Q |
36 |
agcatccatgtcagctctaagagcgacaaaaggaggaa |
73 |
Q |
| |
|
|||||||||||||||||||||||| ||||| ||||||| |
|
|
| T |
26262888 |
agcatccatgtcagctctaagagcaacaaatggaggaa |
26262851 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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