View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16182_low_6 (Length: 387)
Name: NF16182_low_6
Description: NF16182
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16182_low_6 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 223; Significance: 1e-123; HSPs: 17)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 35 - 382
Target Start/End: Complemental strand, 27524396 - 27524041
Alignment:
| Q |
35 |
tctcaaatgtaagaaggaagtaactaaatttttgatgatgcaatgatttgtgctgttagtgaaggagatagtaagtgtatttatagattttgaagttctc |
134 |
Q |
| |
|
||||||||||| |||||| |||||||||| |||||| ||||||||| || | ||||| |||||||||| || |||| ||| |||||||||| |||||||| |
|
|
| T |
27524396 |
tctcaaatgtatgaaggatgtaactaaatatttgataatgcaatgagtttttctgtttgtgaaggagagaggaagtttatatatagattttaaagttctc |
27524297 |
T |
|
| Q |
135 |
tcaaaaccaaattccaagaaaaactattattgatggggttgaaggatatagatcatagggataaggtagcatgtggtgttgtcttcgagtgtaccctacc |
234 |
Q |
| |
|
||||| ||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
27524296 |
tcaaacccaaatttcaagaaaaactattattgaaggggttgaaggatatagatcatagggataaggtagcatgtggtgttgtcttagagtgtaccctacc |
27524197 |
T |
|
| Q |
235 |
ttcttaaacaatgtccaatacaaagcttccacttgctaccaaatgagat--------gtgcaacctcatatttgttgatgatttaattggtgtacttcat |
326 |
Q |
| |
|
|||||||||||| |||||||||||||||||| ||||||||||||||||| ||||||| |||||||| || |||||||||||||| | |||||| |
|
|
| T |
27524196 |
ttcttaaacaatatccaatacaaagcttccaattgctaccaaatgagatgtgctcaagtgcaacgtcatatttcttcatgatttaattggtttccttcat |
27524097 |
T |
|
| Q |
327 |
aattttgtaaacatgcttcagacatgttttcttcattatgataatgatgatgtcca |
382 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
27524096 |
aatttcgtaaacatgcttcagacatgttttcttcattatgataatgctgatgtcca |
27524041 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 55 - 382
Target Start/End: Complemental strand, 27514736 - 27514410
Alignment:
| Q |
55 |
taactaaatttttgatgatgc-aatgatttgtgctgttagtgaaggagatagtaagtgtatttatagattttgaagttctctcaaaaccaaattccaaga |
153 |
Q |
| |
|
||||||||| |||||||||| ||||| ||||||| ||| ||||||||| || ||||||||||||||||||||||||||||||| ||||||||| ||||| |
|
|
| T |
27514736 |
taactaaatacttgatgatgccaatgagttgtgct-tta-tgaaggagagaggaagtgtatttatagattttgaagttctctcagaaccaaatttcaaga |
27514639 |
T |
|
| Q |
154 |
aaaactattattgatggggttgaaggatatagatcatagggataaggtagcatgtggtgttgtcttcgagtgtaccctaccttcttaaac-aatgtccaa |
252 |
Q |
| |
|
||||||||||||| ||| |||| ||||| ||| |||||||||||||| ||||||||||||||| ||||||||||||||||||||||| ||||||||| |
|
|
| T |
27514638 |
gaaactattattgaagggtttgatggatagagagcatagggataaggtctcatgtggtgttgtctaagagtgtaccctaccttcttaaacaaatgtccaa |
27514539 |
T |
|
| Q |
253 |
tacaaagcttccacttgctaccaaatgagatgtgcaacctcatatttgttgatgatttaattggtgtacttcataattttgtaaacatgcttcagacatg |
352 |
Q |
| |
|
||||||||||||||||||||||||||||||||| || |||||||||| || ||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
27514538 |
tacaaagcttccacttgctaccaaatgagatgt-cagcctcatatttcttcatgatttaattggtgtacttcataattttgtaaacatgctttagacatg |
27514440 |
T |
|
| Q |
353 |
ttttcttcattatgataatgatgatgtcca |
382 |
Q |
| |
|
|||||| ||||||||||||| ||||||||| |
|
|
| T |
27514439 |
ttttctgcattatgataatgctgatgtcca |
27514410 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 56 - 372
Target Start/End: Original strand, 27468624 - 27468950
Alignment:
| Q |
56 |
aactaaatttttgatgatgc-aatgatttgtgctgttagtgaaggagatagtaagtgtatttatagattttgaagttctctcaaaaccaaattccaagaa |
154 |
Q |
| |
|
|||||||| ||||||||||| ||||| |||| ||||| ||||||| || || |||||||||||||||||||||||||||||||||| |||||| ||| || |
|
|
| T |
27468624 |
aactaaatatttgatgatgccaatgagttgtcctgtttgtgaaggcgagaggaagtgtatttatagattttgaagttctctcaaaatcaaatttcaacaa |
27468723 |
T |
|
| Q |
155 |
aaactattattgatggggttgaaggatatagatcatagggataaggtagcatgtggtgttgtcttcgagtgtaccctaccttcttaaac-aatgtccaat |
253 |
Q |
| |
|
||||||||||||| ||| |||| ||||| ||| |||||||||||||| ||||||||||||||| ||||||||||||||||||||||| |||||||||| |
|
|
| T |
27468724 |
aaactattattgaagggtttgatggatagagagcatagggataaggtctcatgtggtgttgtctaagagtgtaccctaccttcttaaacaaatgtccaat |
27468823 |
T |
|
| Q |
254 |
acaaagcttccacttgctaccaaatgagat--------gtgcaacctcatatttgttgatgatttaattggtgtacttcataattttgtaaacatgcttc |
345 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||| |||||||||| || |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27468824 |
acaaagcttccacttgctaccaaatgagatgtgctcaagtgcagcctcatatttcttcatgatttaattggtgtacttcataattttgtaaacatgcttc |
27468923 |
T |
|
| Q |
346 |
agacatgttttcttcattatgataatg |
372 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
27468924 |
agacatgttttcttcattatgataatg |
27468950 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 183; E-Value: 7e-99
Query Start/End: Original strand, 37 - 382
Target Start/End: Complemental strand, 27503793 - 27503442
Alignment:
| Q |
37 |
tcaaatgtaagaaggaagtaactaaatttttgatgatgcaatgatttgtgctgttagtgaaggagatagtaagtgtatttatagattttgaagttctctc |
136 |
Q |
| |
|
|||||||||||| ||| |||| ||| | |||||||||||||||| |||||||||| |||||||||| || ||||||||||||||| ||||||||| |||| |
|
|
| T |
27503793 |
tcaaatgtaagatggatgtaattaagtatttgatgatgcaatgaattgtgctgtttgtgaaggagagaggaagtgtatttatagagtttgaagttatctc |
27503694 |
T |
|
| Q |
137 |
aaaaccaaattccaagaaaaactattattgatggggttgaaggatatagatcatagggataaggtagcatgtggtgttgtcttcgagtgtaccctacc-t |
235 |
Q |
| |
|
|||||| |||||| ||||||||||||||||| ||||| |||||||| ||||||||||||||| |||||||||||||||||||| |||||| ||||||| | |
|
|
| T |
27503693 |
aaaacccaattcctagaaaaactattattgaaggggtggaaggatagagatcatagggataatgtagcatgtggtgttgtcttagagtgtcccctacctt |
27503594 |
T |
|
| Q |
236 |
tcttaaacaatgtccaatacaaagcttccacttgctaccaaatgagatgtg--caa------cctcatatttgttgatgatttaattggtgtacttcata |
327 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||| |||| ||||||| ||| ||||||||||||| ||||||||||| | | | ||| |
|
|
| T |
27503593 |
tcctaaacaatgtccaatacaaagcttccacttgctaaaaaataagatgtgatcaagtatagcctcatatttgttcatgatttaattagcg---tcaata |
27503497 |
T |
|
| Q |
328 |
attttgtaaacatgcttcagacatgttttcttcattatgataatgatgatgtcca |
382 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
27503496 |
attttgtaaacatgcttcagacatgttttcttcattatgataatgttgatgtcca |
27503442 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 158; E-Value: 6e-84
Query Start/End: Original strand, 37 - 285
Target Start/End: Complemental strand, 27508737 - 27508488
Alignment:
| Q |
37 |
tcaaatgtaagaaggaagtaactaaatttttgatgatgc-aatgatttgtgctgttagtgaaggagatagtaagtgtatttatagattttgaagttctct |
135 |
Q |
| |
|
||||| |||||||||| |||||||| | |||||||||| ||||| |||||||||| |||||||||| || ||||||||||||||| ||||||||| ||| |
|
|
| T |
27508737 |
tcaaaagtaagaaggatgtaactaagtaattgatgatgctaatgagttgtgctgtttgtgaaggagagaggaagtgtatttatagagtttgaagttatct |
27508638 |
T |
|
| Q |
136 |
caaaaccaaattccaagaaaaactattattgatggggttgaaggatatagatcatagggataaggtagcatgtggtgttgtcttcgagtgtaccctacct |
235 |
Q |
| |
|
||||||| |||||| ||||||||||||||||| ||||| |||||||| ||| ||||| ||||||||||||||||||| |||||| ||||||||||||||| |
|
|
| T |
27508637 |
caaaacccaattcctagaaaaactattattgaaggggtggaaggatagagagcatagtgataaggtagcatgtggtgctgtcttagagtgtaccctacct |
27508538 |
T |
|
| Q |
236 |
tcttaaacaatgtccaatacaaagcttccacttgctaccaaatgagatgt |
285 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
27508537 |
tcttaaacaatgtccaatacaaagcttccacttcctaccaaatgagatgt |
27508488 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 54 - 372
Target Start/End: Original strand, 27475855 - 27476180
Alignment:
| Q |
54 |
gtaactaaatttttgatgatgc-aatgatttgtgctgttagtgaaggagatagtaagtgtatttatagattttgaagttctctcaaaaccaaattccaag |
152 |
Q |
| |
|
|||||||||| ||||||||||| ||| | |||||||||| ||||||||| || ||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
27475855 |
gtaactaaatatttgatgatgccaatcagttgtgctgtttatgaaggagagaggaagtgtatttatagattttgaagttctctcaaaaccaaatttcaag |
27475954 |
T |
|
| Q |
153 |
aaaaactattattgatggggttgaaggatatagatcatagggataaggtagcatgtggtgttgtcttcgagtgtaccctacc-ttcttaaacaatgtcca |
251 |
Q |
| |
|
| ||||||||||||| ||| |||| ||||| ||| || ||||||||||||||||| ||||||||||| |||||||||||||| ||| ||||||||||||| |
|
|
| T |
27475955 |
agaaactattattgaagggtttgatggatagagagcacagggataaggtagcatggggtgttgtcttagagtgtaccctacctttcctaaacaatgtcca |
27476054 |
T |
|
| Q |
252 |
atacaaagcttccacttgctaccaaatgagatgtg--caa------cctcatatttgttgatgatttaattggtgtacttcataattttgtaaacatgct |
343 |
Q |
| |
|
||||||||||||||||||||| |||| ||||||| ||| ||||||||||||| ||||||||||| | | | |||||||||||| |||||| |
|
|
| T |
27476055 |
atacaaagcttccacttgctaaaaaataagatgtgatcaagtatagcctcatatttgttcatgatttaattagcg---tcaataattttgtaagcatgct |
27476151 |
T |
|
| Q |
344 |
tcagacatgttttcttcattatgataatg |
372 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
27476152 |
tcagacatgttttcttcattatgataatg |
27476180 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 285 - 382
Target Start/End: Complemental strand, 27489723 - 27489628
Alignment:
| Q |
285 |
tgcaacctcatatttgttgatgatttaattggtgtacttcataattttgtaaacatgcttcagacatgttttcttcattatgataatgatgatgtcca |
382 |
Q |
| |
|
||||||||||||||| || ||| ||||||||| |||| ||||||||||||||||||| |||||||||||||||||||||| |||| |||||||| |
|
|
| T |
27489723 |
tgcaacctcatatttattcatgcattaattggt--actttgtaattttgtaaacatgctttagacatgttttcttcattatgaaaatgtcgatgtcca |
27489628 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 323 - 382
Target Start/End: Original strand, 27556962 - 27557021
Alignment:
| Q |
323 |
tcataattttgtaaacatgcttcagacatgttttcttcattatgataatgatgatgtcca |
382 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||| || |||| |||| |
|
|
| T |
27556962 |
tcataattttgtaaacatgctttagacatgttttcttcattatgatagtgttgatttcca |
27557021 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 320 - 382
Target Start/End: Complemental strand, 27506325 - 27506263
Alignment:
| Q |
320 |
acttcataattttgtaaacatgcttcagacatgttttcttcattatgataatgatgatgtcca |
382 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||| | | || ||||||||| |
|
|
| T |
27506325 |
acttcataattttgtaaacatgtttcagacatgttttcttcattatcaaagtgctgatgtcca |
27506263 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 320 - 385
Target Start/End: Original strand, 27486459 - 27486524
Alignment:
| Q |
320 |
acttcataattttgtaaacatgcttcagacatgttttcttcattatgataatgatgatgtccatct |
385 |
Q |
| |
|
||||||||||| |||||||||| ||||||||||||||||||||||| | | || |||||||||||| |
|
|
| T |
27486459 |
acttcataattgtgtaaacatgtttcagacatgttttcttcattattaaagtgttgatgtccatct |
27486524 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #11
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 321 - 382
Target Start/End: Complemental strand, 27508486 - 27508425
Alignment:
| Q |
321 |
cttcataattttgtaaacatgcttcagacatgttttcttcattatgataatgatgatgtcca |
382 |
Q |
| |
|
|||||||||||| |||||||||| |||||||||||||||||||||| |||| ||||||||| |
|
|
| T |
27508486 |
cttcataattttataaacatgctgaagacatgttttcttcattatgacaatgctgatgtcca |
27508425 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #12
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 320 - 382
Target Start/End: Original strand, 27479399 - 27479461
Alignment:
| Q |
320 |
acttcataattttgtaaacatgcttcagacatgttttcttcattatgataatgatgatgtcca |
382 |
Q |
| |
|
||||||||||| |||||||||| ||||||||||||||||||||||| || || ||||||||| |
|
|
| T |
27479399 |
acttcataattgtgtaaacatgtttcagacatgttttcttcattatcatggtgctgatgtcca |
27479461 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 318 - 372
Target Start/End: Complemental strand, 27526747 - 27526692
Alignment:
| Q |
318 |
gtacttcataattttgtaaacatgcttcagacatg-ttttcttcattatgataatg |
372 |
Q |
| |
|
|||||||||||||||| |||||| |||||||||| |||||||||||||||||||| |
|
|
| T |
27526747 |
gtacttcataattttgaaaacattgttcagacatgtttttcttcattatgataatg |
27526692 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 330 - 380
Target Start/End: Original strand, 27497858 - 27497908
Alignment:
| Q |
330 |
tttgtaaacatgcttcagacatgttttcttcattatgataatgatgatgtc |
380 |
Q |
| |
|
|||||||||| |||| |||||||||||||||||||||||||| ||||||| |
|
|
| T |
27497858 |
tttgtaaacaggcttaggacatgttttcttcattatgataatgttgatgtc |
27497908 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 201 - 282
Target Start/End: Complemental strand, 27517451 - 27517369
Alignment:
| Q |
201 |
tagcatgtggtgttgtcttc-gagtgtaccctaccttcttaaacaatgtccaatacaaagcttccacttgctaccaaatgaga |
282 |
Q |
| |
|
|||||||||| |||||||| || ||||||| ||||||| |||||||| |||| |||||||||||||||| ||||| ||||| |
|
|
| T |
27517451 |
tagcatgtggcgttgtcttaagattgtaccccaccttctcaaacaatggccaacacaaagcttccacttggaaccaattgaga |
27517369 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 322 - 382
Target Start/End: Complemental strand, 27431937 - 27431878
Alignment:
| Q |
322 |
ttcataattttgtaaacatgcttcagacatgttttcttcattatgataatgatgatgtcca |
382 |
Q |
| |
|
||||||||||||||||||||| | | ||||| ||||||||| |||||||| ||||||||| |
|
|
| T |
27431937 |
ttcataattttgtaaacatgcattatacatg-tttcttcatcttgataatgttgatgtcca |
27431878 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 318 - 382
Target Start/End: Original strand, 27554101 - 27554164
Alignment:
| Q |
318 |
gtacttcataattttgtaaacatgcttcagacatgttttcttcattatgataatgatgatgtcca |
382 |
Q |
| |
|
|||||||||||||||| ||||||| | ||||||| |||||||||| |||||||| |||| |||| |
|
|
| T |
27554101 |
gtacttcataattttgcaaacatgtctaagacatg-tttcttcattttgataatgttgatctcca |
27554164 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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