View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16182_low_8 (Length: 324)

Name: NF16182_low_8
Description: NF16182
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16182_low_8
NF16182_low_8
[»] chr6 (2 HSPs)
chr6 (1-215)||(27321831-27322046)
chr6 (1-101)||(27318439-27318541)
[»] chr7 (1 HSPs)
chr7 (1-215)||(34173740-34173951)
[»] chr4 (3 HSPs)
chr4 (129-215)||(14876719-14876805)
chr4 (1-56)||(14869011-14869066)
chr4 (1-56)||(14876868-14876923)
[»] chr3 (2 HSPs)
chr3 (1-183)||(5029487-5029661)
chr3 (1-101)||(5001328-5001430)
[»] chr1 (1 HSPs)
chr1 (146-204)||(7987689-7987747)
[»] scaffold0112 (1 HSPs)
scaffold0112 (146-204)||(37416-37474)
[»] scaffold0093 (2 HSPs)
scaffold0093 (127-204)||(2238-2312)
scaffold0093 (127-204)||(6861-6935)


Alignment Details
Target: chr6 (Bit Score: 132; Significance: 2e-68; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 1 - 215
Target Start/End: Complemental strand, 27322046 - 27321831
Alignment:
Q  1 attttgactcagtcaatgatgatttggcacacaatgaccgtccacgtgggtaaatannnnnnnnnattaaattttaagccacgccggattttaatggaat 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||         |||||||||||||||||||||||||||||||||||    
T  27322046 attttgactcagtcaatgatgatttggcacacaatgaccgtccacgtgggtaaatatttttttttattaaattttaagccacgccggattttaatggaat 27321947  T
Q  101 tnnnnnnnnnnnnnnnt-tcaagttgctttggcacgtgtgagagctgttcaacggtaaaatgttagggttttaaaagccccaattttttccccaatctcc 199  Q
    |                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27321946 taaaaaaaaaaaaaaaaatcaagttgctttggcacgtgtgagagctgttcaacggtaaaatgttagggttttaaaagccccaattttttccccaatctcc 27321847  T
Q  200 attttcctgtaatcga 215  Q
    ||||||||||||||||    
T  27321846 attttcctgtaatcga 27321831  T

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Target: chr6; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 101
Target Start/End: Original strand, 27318439 - 27318541
Alignment:
Q  1 attttgactcagtcaatgatgatttggcacacaatgaccgtccacgtgggtaaata--nnnnnnnnnattaaattttaagccacgccggattttaatgga 98  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||           |||||||||||||||||||||||||||||||||    
T  27318439 attttgactcagtcaatgatgatttggcacacaatgaccgtccacgtgggtaaatatttttttttttattaaattttaagccacgccggattttaatgga 27318538  T
Q  99 att 101  Q
    |||    
T  27318539 att 27318541  T

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Target: chr7 (Bit Score: 95; Significance: 2e-46; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 1 - 215
Target Start/End: Complemental strand, 34173951 - 34173740
Alignment:
Q  1 attttgactcagtcaatgatgatttggcacacaatgaccgtccacgtgggtaaatannnnnnnnn--attaaattttaagccacgccggattttaatgga 98  Q
    |||||||||||||||||||||||||||||||| ||||||||||| |||||||||||           ||| |||||||||||||||||||||||||||||    
T  34173951 attttgactcagtcaatgatgatttggcacacgatgaccgtccatgtgggtaaataaatttttttttatttaattttaagccacgccggattttaatgga 34173852  T
Q  99 attnnnnnnnnnnnnnnnttcaagttgctttggcacgtgtgagagctgttcaacggtaaaatgttagggttttaaaagccccaattttttccccaatctc 198  Q
    |||               | |||||||   ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  34173851 attaaaaaaaaaaaaa--tccaagttg---tggcacgtgtgagagctgttcaacggtaaaatgttagggttttaaaagctccaattttttccccaatctc 34173757  T
Q  199 cattttcctgtaatcga 215  Q
    |||||||||||||||||    
T  34173756 cattttcctgtaatcga 34173740  T

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Target: chr4 (Bit Score: 67; Significance: 9e-30; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 129 - 215
Target Start/End: Complemental strand, 14876805 - 14876719
Alignment:
Q  129 tggcacgtgtgagagctgttcaacggtaaaatgttagggttttaaaagccccaattttttccccaatctccattttcctgtaatcga 215  Q
    |||||||||||||||||||| |||||||| ||  ||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  14876805 tggcacgtgtgagagctgtttaacggtaatatcctagggttttaaaagccccaattttttccccaatctccattttcctttaatcga 14876719  T

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Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 14869011 - 14869066
Alignment:
Q  1 attttgactcagtcaatgatgatttggcacacaatgaccgtccacgtgggtaaata 56  Q
    |||||||||||||||||||||||||||| ||| ||||| |  ||||||||||||||    
T  14869011 attttgactcagtcaatgatgatttggcccacgatgacaggacacgtgggtaaata 14869066  T

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Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 14876923 - 14876868
Alignment:
Q  1 attttgactcagtcaatgatgatttggcacacaatgaccgtccacgtgggtaaata 56  Q
    |||||||||||||||||||||||||||| ||| ||||| |  ||||||||||||||    
T  14876923 attttgactcagtcaatgatgatttggcccacgatgacaggacacgtgggtaaata 14876868  T

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Target: chr3 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 183
Target Start/End: Complemental strand, 5029661 - 5029487
Alignment:
Q  1 attttgactcagtcaatgatgatttggcacacaatgaccgtccacgtgggtaaatannnnnnnnn-attaaattttaagccacgccggattttaatggaa 99  Q
    |||||||||||||||||||||||||||||||| ||||| ||||||||||||||| |          ||| ||||||||||||| || |||||||||||||    
T  5029661 attttgactcagtcaatgatgatttggcacacgatgacagtccacgtgggtaaaaaaaaaaaatttatttaattttaagccacaccagattttaatggaa 5029562  T
Q  100 ttnnnnnnnnnnnnnnnttcaagttgctttggcacgtgtgagagctgttcaacggtaaaatgttagggttttaaaagccccaat 183  Q
    ||                ||||||||   ||||||||||||||||||||||||| ||| |||||||||||||||||||||||||    
T  5029561 ttaaaaaaaaaa------tcaagttg---tggcacgtgtgagagctgttcaacgataatatgttagggttttaaaagccccaat 5029487  T

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Target: chr3; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 1 - 101
Target Start/End: Original strand, 5001328 - 5001430
Alignment:
Q  1 attttgactcagtcaatgatgatttggcacacaatgaccgtccacgtgggtaaata--nnnnnnnnnattaaattttaagccacgccggattttaatgga 98  Q
    |||||||||||||||||||||||||||||||| |||||  ||||||||||||||||           ||| |||||||||||||||||||||||||||||    
T  5001328 attttgactcagtcaatgatgatttggcacacgatgacaatccacgtgggtaaatatttatttttttatttaattttaagccacgccggattttaatgga 5001427  T
Q  99 att 101  Q
    |||    
T  5001428 att 5001430  T

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Target: chr1 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 146 - 204
Target Start/End: Complemental strand, 7987747 - 7987689
Alignment:
Q  146 gttcaacggtaaaatgttagggttttaaaagccccaattttttccccaatctccatttt 204  Q
    |||||||||||| ||  ||| ||||||||||||||||||||||||||||||||||||||    
T  7987747 gttcaacggtaatatcctagagttttaaaagccccaattttttccccaatctccatttt 7987689  T

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Target: scaffold0112 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: scaffold0112
Description:

Target: scaffold0112; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 146 - 204
Target Start/End: Original strand, 37416 - 37474
Alignment:
Q  146 gttcaacggtaaaatgttagggttttaaaagccccaattttttccccaatctccatttt 204  Q
    |||||||||||| ||  ||| ||||||||||||||||||||||||| ||||||||||||    
T  37416 gttcaacggtaatatcctagtgttttaaaagccccaattttttcccaaatctccatttt 37474  T

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Target: scaffold0093 (Bit Score: 32; Significance: 0.000000007; HSPs: 2)
Name: scaffold0093
Description:

Target: scaffold0093; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 127 - 204
Target Start/End: Complemental strand, 2312 - 2238
Alignment:
Q  127 tttggcacgtgtgagagctgttcaacggtaaaatgttagggttttaaaagccccaattttttccccaatctccatttt 204  Q
    ||||||||||| |||||   |||||| |||| ||  ||| |||||||||||| |||||||||||| ||||||||||||    
T  2312 tttggcacgtgagagag---ttcaacagtaatatcctagtgttttaaaagccacaattttttcccaaatctccatttt 2238  T

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Target: scaffold0093; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 127 - 204
Target Start/End: Complemental strand, 6935 - 6861
Alignment:
Q  127 tttggcacgtgtgagagctgttcaacggtaaaatgttagggttttaaaagccccaattttttccccaatctccatttt 204  Q
    ||||||||||| |||||   |||||| |||| ||  ||| |||||||||||| |||||||||||| ||||||||||||    
T  6935 tttggcacgtgagagag---ttcaacagtaatatcctagtgttttaaaagccacaattttttcccaaatctccatttt 6861  T

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