View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16182_low_9 (Length: 300)
Name: NF16182_low_9
Description: NF16182
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16182_low_9 |
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Alignment Details
Target: chr1 (Bit Score: 175; Significance: 3e-94; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 18 - 196
Target Start/End: Complemental strand, 10127031 - 10126853
Alignment:
| Q |
18 |
agttcggtaggttagtgctctgtgtgatgattcatcgtctgatgaatcagagctgcttccttcgtcatcagaatcaacagcgagtttcttcttcagtgtt |
117 |
Q |
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| T |
10127031 |
agttcgataggttagtgctctgtgtgatgattcatcgtctgatgaatcagagctgcttccttcgtcatcagaatcaacagcgagtttcttcttcagtgtt |
10126932 |
T |
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| Q |
118 |
tctccttttgcattcttttcctgaaagaagcacatcgccttatatcagttaatagaggaaaaataagtttcttatcact |
196 |
Q |
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| T |
10126931 |
tctccttttgcattcttttcctgaaagaagcacatcgccttatatcagttaatagaggaaaaataagtttcttatcact |
10126853 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 71 - 206
Target Start/End: Complemental strand, 10119724 - 10119588
Alignment:
| Q |
71 |
tgcttccttcgtcatcagaatcaacagcgagtttcttcttcagtgtttctccttttgcattcttttcctgaaagaagcacatcgccttatatcagttaat |
170 |
Q |
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| T |
10119724 |
tgcttccttcgtcatcagaatcatcagcgagtttcttctttggtgtttctccttttgaattcttttcctgaagtaagcacgtcactttatatcatttact |
10119625 |
T |
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| Q |
171 |
aga-ggaaaaataagtttcttatcactgttactatat |
206 |
Q |
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| T |
10119624 |
agacgcaaaaataaatgtctcatcattgtgactatat |
10119588 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 216 - 288
Target Start/End: Complemental strand, 10126854 - 10126783
Alignment:
| Q |
216 |
cttattccttgtgtgttatcaatnnnnnnngcaagtgtaaataaattattttaaatttttaaatatagagaat |
288 |
Q |
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| T |
10126854 |
cttattccttgtgtgttatcaataaaaaa-gcaagtgtaaataaattattttaaatttttaaatatagagaat |
10126783 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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