View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16183_high_4 (Length: 331)
Name: NF16183_high_4
Description: NF16183
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16183_high_4 |
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| [»] chr4 (4 HSPs) |
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| [»] chr2 (3 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 231; Significance: 1e-127; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 76 - 331
Target Start/End: Complemental strand, 55907854 - 55907603
Alignment:
| Q |
76 |
ccaaacattcatatcaaaatctctactagcgaaaggattactactattgaagtcaagttcttcaaggaaagggaagcaatcagaaataagaacaaggtca |
175 |
Q |
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| T |
55907854 |
ccaaacattcatatcaaaatctctactagcgaaaggattactactactgaagtcaagttcttcaaggaaagggaagcaatcagaaataagaacaaggtca |
55907755 |
T |
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| Q |
176 |
ttgttacgtagagaagcaatgttggaacaaatgagagaagtcaaagttgtaatattaattttgggagaaagctcgtaagccagtagcggggatgataggt |
275 |
Q |
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| T |
55907754 |
ttgttacgtagagaagcaatgttggaacaaatgagagaattcaaagttgtaat----attttgggagaaagctcgtaagccagtagcggggatgataggt |
55907659 |
T |
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| Q |
276 |
tggttggagagattgagcgaagtgatatttaatggaaaaggtatttggcagagaag |
331 |
Q |
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| T |
55907658 |
tggttggagagattgagcgaagtgatatttaatggaaaaggtatttggcagagaag |
55907603 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 127 - 227
Target Start/End: Original strand, 547943 - 548043
Alignment:
| Q |
127 |
gtcaagttcttcaaggaaagggaagcaatcagaaataagaacaaggtcattgttacgtagagaagcaatgttggaacaaatgagagaagtcaaagttgta |
226 |
Q |
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|||||||||||||||||||||||||||| |||| ||| ||| ||||| ||||||| |||||| |||||||||||||| ||||||| ||||||||||| |
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| T |
547943 |
gtcaagttcttcaaggaaagggaagcaaccagatatacaaaccaggtcgttgttacagagagaatcaatgttggaacaagtgagagagttcaaagttgta |
548042 |
T |
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| Q |
227 |
a |
227 |
Q |
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| T |
548043 |
a |
548043 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 195 - 301
Target Start/End: Original strand, 661854 - 661956
Alignment:
| Q |
195 |
tgttggaacaaatgagagaagtcaaagttgtaatattaattttgggagaaagctcgtaagccagtagcggggatgataggttggttggagagattgagcg |
294 |
Q |
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| T |
661854 |
tgttgtaacaaatgagagaggttaaagttgtaatata----ttgggagaaagctcgcaaaccattagcgggaatggtggtttggttggagagattgagtg |
661949 |
T |
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| Q |
295 |
aagtgat |
301 |
Q |
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| T |
661950 |
acgtgat |
661956 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 127 - 228
Target Start/End: Complemental strand, 3437748 - 3437647
Alignment:
| Q |
127 |
gtcaagttcttcaaggaaagggaagcaatcagaaataagaacaaggtcattgttacgtagagaagcaatgttggaacaaatgagagaagtcaaagttgta |
226 |
Q |
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| T |
3437748 |
gtcaagtacttcaagtaaagggaagcaatcagagataagaattagatagcggtcatggagaaaatcaaagttggaacaactgagagaggtcaaagttgta |
3437649 |
T |
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| Q |
227 |
at |
228 |
Q |
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|| |
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| T |
3437648 |
at |
3437647 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 219; Significance: 1e-120; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 76 - 331
Target Start/End: Complemental strand, 1036790 - 1036539
Alignment:
| Q |
76 |
ccaaacattcatatcaaaatctctactagcgaaaggattactactattgaagtcaagttcttcaaggaaagggaagcaatcagaaataagaacaaggtca |
175 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||| |
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| T |
1036790 |
ccaaacattcatatcaaaatctctactagcgaaaggattactactattgaagtcaagttcttcaaggaaaggaaagcaatcagaaataagaacaagatca |
1036691 |
T |
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| Q |
176 |
ttgttacgtagagaagcaatgttggaacaaatgagagaagtcaaagttgtaatattaattttgggagaaagctcgtaagccagtagcggggatgataggt |
275 |
Q |
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| T |
1036690 |
ttgttacatatagaagcaatgttggaacaaatgagagaagtcaaagttgtaat----attttgggagaaagctcgtaagccagtagcggggatgataggt |
1036595 |
T |
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| Q |
276 |
tggttggagagattgagcgaagtgatatttaatggaaaaggtatttggcagagaag |
331 |
Q |
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| T |
1036594 |
tggttggagagattgagcgaagtgatatttaatggaaaaggtatttggtagagaag |
1036539 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 252 - 331
Target Start/End: Complemental strand, 1036424 - 1036345
Alignment:
| Q |
252 |
aagccagtagcggggatgataggttggttggagagattgagcgaagtgatatttaatggaaaaggtatttggcagagaag |
331 |
Q |
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| T |
1036424 |
aagccagtagcggggatgataggttggttggagagattgagcgaagtgatatttaatggaaaaggtatttggcagagaag |
1036345 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 13 - 80
Target Start/End: Complemental strand, 1044970 - 1044903
Alignment:
| Q |
13 |
aaaatctattattcctctttattcttggtgaagcttacttcctagtaacctaagtcagcaaagccaaa |
80 |
Q |
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| T |
1044970 |
aaaatctattattcctgtttattcctggtgaagcttacttcctagtaacctaagtcagcaaagccaaa |
1044903 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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