View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16183_high_7 (Length: 306)

Name: NF16183_high_7
Description: NF16183
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16183_high_7
NF16183_high_7
[»] scaffold0428 (3 HSPs)
scaffold0428 (16-295)||(2315-2594)
scaffold0428 (16-241)||(15059-15278)
scaffold0428 (173-242)||(13827-13896)
[»] chr6 (11 HSPs)
chr6 (16-295)||(33258194-33258473)
chr6 (21-295)||(33414568-33414840)
chr6 (73-271)||(31564920-31565117)
chr6 (98-295)||(33269541-33269740)
chr6 (16-165)||(33293102-33293251)
chr6 (175-274)||(33384049-33384148)
chr6 (21-272)||(33395074-33395326)
chr6 (16-241)||(33278975-33279194)
chr6 (27-119)||(28872999-28873091)
chr6 (182-255)||(33406911-33406984)
chr6 (173-242)||(33280357-33280426)
[»] chr2 (1 HSPs)
chr2 (16-274)||(17447703-17447961)


Alignment Details
Target: scaffold0428 (Bit Score: 272; Significance: 1e-152; HSPs: 3)
Name: scaffold0428
Description:

Target: scaffold0428; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 16 - 295
Target Start/End: Complemental strand, 2594 - 2315
Alignment:
Q  16 aacctgtgcagggatgatggactgtaagaaagctcgtgccgaaacagaaggtgatcttgaaaagccgcaagcatatctcatcaaaaagggtctctcatcc 115  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2594 aaccggtgcagggatgatggactgtaagaaagctcgtgccgaaacagaaggtgatcttgaaaagccgcaagcatatctcatcaaaaagggtctctcatcc 2495  T
Q  116 gctgataggaaatccgggagactagcagaagaaggaagaatcggtacatatcactcgcgattcacacattggtgttctaattgaagtgaacggtgaaacc 215  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2494 gctgataagaaatccgggagactagcagaagaaggaagaatcggtacatatcactcgcgattcacacattggtgttctaattgaagtgaacggtgaaacc 2395  T
Q  216 gactttgttggcagaagtgagaaatttaaggagttggttgacgatcttgcaatgcaagtagctttttggtccacaggttc 295  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2394 gactttgttggcagaagtgagaaatttaaggagttggttgacgatcttgcaatgcaagtagctttttggtccacaggttc 2315  T

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Target: scaffold0428; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 16 - 241
Target Start/End: Original strand, 15059 - 15278
Alignment:
Q  16 aacctgtgcagggatgatggactgtaagaaagctcgtgccgaaacagaaggtgatcttgaaaagccgcaagcatatctcatcaaaaagggtctctcatcc 115  Q
    |||| |||| |||| |||||||||||| || || | ||||||||| |||||| ||| ||||||| |||||||||| || |  ||||||||||||| |||     
T  15059 aaccggtgctgggacgatggactgtaataatgcccttgccgaaactgaaggttatcatgaaaaggcgcaagcataccttag-aaaaagggtctcttatca 15157  T
Q  116 gctgataggaaatccgggagactagcagaagaaggaagaatcggtacatatcactcgcgattcacacattggtgttctaattgaagtgaacggtgaaacc 215  Q
    ||||| | ||||||||| |  |||  |    |||||||||| |||||||| || || ||||||||||||  |||||||||||||||| ||| ||||||||    
T  15158 gctgacaagaaatccggcaagctacta----aaggaagaattggtacata-cattcacgattcacacatcagtgttctaattgaagttaactgtgaaacc 15252  T
Q  216 gactttgttggcagaagtgagaaatt 241  Q
    ||||||| |||||||||| |||||||    
T  15253 gactttgatggcagaagttagaaatt 15278  T

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Target: scaffold0428; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 173 - 242
Target Start/End: Original strand, 13827 - 13896
Alignment:
Q  173 cgattcacacattggtgttctaattgaagtgaacggtgaaaccgactttgttggcagaagtgagaaattt 242  Q
    |||||||| ||||||| ||||| ||||||| ||| |||| || |||||| ||||||||||||||||||||    
T  13827 cgattcacgcattggttttctatttgaagttaactgtgatactgacttttttggcagaagtgagaaattt 13896  T

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Target: chr6 (Bit Score: 272; Significance: 1e-152; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 16 - 295
Target Start/End: Complemental strand, 33258473 - 33258194
Alignment:
Q  16 aacctgtgcagggatgatggactgtaagaaagctcgtgccgaaacagaaggtgatcttgaaaagccgcaagcatatctcatcaaaaagggtctctcatcc 115  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33258473 aaccggtgcagggatgatggactgtaagaaagctcgtgccgaaacagaaggtgatcttgaaaagccgcaagcatatctcatcaaaaagggtctctcatcc 33258374  T
Q  116 gctgataggaaatccgggagactagcagaagaaggaagaatcggtacatatcactcgcgattcacacattggtgttctaattgaagtgaacggtgaaacc 215  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33258373 gctgataagaaatccgggagactagcagaagaaggaagaatcggtacatatcactcgcgattcacacattggtgttctaattgaagtgaacggtgaaacc 33258274  T
Q  216 gactttgttggcagaagtgagaaatttaaggagttggttgacgatcttgcaatgcaagtagctttttggtccacaggttc 295  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33258273 gactttgttggcagaagtgagaaatttaaggagttggttgacgatcttgcaatgcaagtagctttttggtccacaggttc 33258194  T

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Target: chr6; HSP #2
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 21 - 295
Target Start/End: Complemental strand, 33414840 - 33414568
Alignment:
Q  21 gtgcagggatgatggactgtaagaaagctcgtgccgaaacagaaggtgatcttgaaaagccgcaagcatatctcatcaaaaagggtctctcatccgctga 120  Q
    |||||||||||||||||||||||||||||| ||| ||||| ||||| |||||||||||| |||||||||||||||  |||||||||||||||||||||||    
T  33414840 gtgcagggatgatggactgtaagaaagctcttgctgaaacggaaggcgatcttgaaaaggcgcaagcatatctcaggaaaaagggtctctcatccgctga 33414741  T
Q  121 taggaaatccgggagactagcagaagaaggaagaatcggtacatatcactcgcgattcacacattggtgttctaattgaagtgaacggtgaaaccgactt 220  Q
    || ||||||||| ||||||||||  |||||||||||||||||||| || || |||| |||  |||||||||||||||||||||||| ||||||| |||||    
T  33414740 taagaaatccggaagactagcagctgaaggaagaatcggtacata-cattcacgatgcacgtattggtgttctaattgaagtgaactgtgaaacggactt 33414642  T
Q  221 tgttggcagaagtgagaaatttaaggagttggttgacgatcttgcaatgcaagtagctttttggtccacaggttc 295  Q
    ||||||||||||||||||||| |||||||||||||| ||||||||||||||||| |||  || ||||||||||||    
T  33414641 tgttggcagaagtgagaaattcaaggagttggttgatgatcttgcaatgcaagttgctgctt-gtccacaggttc 33414568  T

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Target: chr6; HSP #3
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 73 - 271
Target Start/End: Original strand, 31564920 - 31565117
Alignment:
Q  73 tgaaaagccgcaagcatatctcatcaaaaagggtctctcatccgctgataggaaatccgggagactagcagaagaaggaagaatcggtacatatcactcg 172  Q
    ||||||| |||||||||| ||||  ||||||||||||||||||||||| | ||||||||| |||| ||  |  |||||||||||||||||||| || ||     
T  31564920 tgaaaaggcgcaagcatacctcagaaaaaagggtctctcatccgctgacaagaaatccggaagacgagttgctgaaggaagaatcggtacata-cattca 31565018  T
Q  173 cgattcacacattggtgttctaattgaagtgaacggtgaaaccgactttgttggcagaagtgagaaatttaaggagttggttgacgatcttgcaatgca 271  Q
    |||||||| |||| |||||||||||||||||||  ||||||| |||||| | || |||||||||||||| |||||||||||| | ||||||||||||||    
T  31565019 cgattcacgcattagtgttctaattgaagtgaaatgtgaaacggactttatcggtagaagtgagaaattcaaggagttggttcatgatcttgcaatgca 31565117  T

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Target: chr6; HSP #4
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 98 - 295
Target Start/End: Complemental strand, 33269740 - 33269541
Alignment:
Q  98 aaaaagggtctctcatccgctgataggaaatccgggagactagcagaagaaggaagaatcggtacatat---cactcgcgattcacacattggtgttcta 194  Q
    ||||||||||||||||||||||||| ||| || |  ||||||||||  |||| ||||||||||||||||   || || | || ||  ||| |||||||||    
T  33269740 aaaaagggtctctcatccgctgataagaagtctgcaagactagcagctgaagaaagaatcggtacatatatacattcacaatgcatgcatcggtgttcta 33269641  T
Q  195 attgaagtgaacggtgaaaccgactttgttggcagaagtgagaaatttaaggagttggttgacgatcttgcaatgcaagtagctttttggtccacaggtt 294  Q
    |||||||||||| |||||||||||||||||||||||||||||||||| ||| |||||||||| ||||||||||||||||| |||  || |||||||||||    
T  33269640 attgaagtgaactgtgaaaccgactttgttggcagaagtgagaaattcaagaagttggttgatgatcttgcaatgcaagttgctgctt-gtccacaggtt 33269542  T

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Target: chr6; HSP #5
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 16 - 165
Target Start/End: Complemental strand, 33293251 - 33293102
Alignment:
Q  16 aacctgtgcagggatgatggactgtaagaaagctcgtgccgaaacagaaggtgatcttgaaaagccgcaagcatatctcatcaaaaagggtctctcatcc 115  Q
    |||| |||| ||||||||||||||||||||||||| ||| ||||||||||||||||||||||||  | ||||||| ||||  |||||||||||||||| |    
T  33293251 aaccggtgctgggatgatggactgtaagaaagctcatgctgaaacagaaggtgatcttgaaaaggtgaaagcatacctcagaaaaaagggtctctcattc 33293152  T
Q  116 gctgataggaaatccgggagactagcagaagaaggaagaatcggtacata 165  Q
    ||||||| ||||||| | ||||||||||  ||||||||||| ||||||||    
T  33293151 gctgataagaaatccagaagactagcagctgaaggaagaattggtacata 33293102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 175 - 274
Target Start/End: Complemental strand, 33384148 - 33384049
Alignment:
Q  175 attcacacattggtgttctaattgaagtgaacggtgaaaccgactttgttggcagaagtgagaaatttaaggagttggttgacgatcttgcaatgcaagt 274  Q
    |||||||||| ||||||||||||||||||||| || ||||||||||||| ||||||||||||||| |||||||||||||||| |||||||||||||||||    
T  33384148 attcacacatcggtgttctaattgaagtgaactgtcaaaccgactttgtcggcagaagtgagaaaattaaggagttggttgatgatcttgcaatgcaagt 33384049  T

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Target: chr6; HSP #7
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 21 - 272
Target Start/End: Complemental strand, 33395326 - 33395074
Alignment:
Q  21 gtgcagggatgatggactgtaagaaagctcgtgccgaaacagaaggtgatcttgaaaagccgcaagcatatctcatcaaaaagggtctctcatccgctga 120  Q
    |||| ||||| |||||||||||||||||    ||||||||  ||||||||||||||||| | ||| |||| || |  | ||||||||||||||| |||||    
T  33395326 gtgctgggattatggactgtaagaaagccttagccgaaactaaaggtgatcttgaaaaggcccaatcataccttagaacaaagggtctctcatcagctga 33395227  T
Q  121 taggaaatccgggagactagcagaagaaggaagaatcggtacatatcactcgcgattcacacattggtgttctaattgaagtgaacggtgaaaccgactt 220  Q
     | ||||||||| || |||||||  |||||||||||||||| ||| || |  |||| ||| |||   |||||| |||||||||||| |||||||||||||    
T  33395226 caagaaatccggtaggctagcagctgaaggaagaatcggtaaata-cattgacgatgcacgcatctatgttctgattgaagtgaactgtgaaaccgactt 33395128  T
Q  221 tgttgg--cagaagtgagaaatttaaggagttggttgacgatcttgcaatgcaa 272  Q
    ||||||  ||||||||| | ||| |||||||||||||  |||||| ||||||||    
T  33395127 tgttggcacagaagtgatagattcaaggagttggttgctgatctttcaatgcaa 33395074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 16 - 241
Target Start/End: Complemental strand, 33279194 - 33278975
Alignment:
Q  16 aacctgtgcagggatgatggactgtaagaaagctcgtgccgaaacagaaggtgatcttgaaaagccgcaagcatatctcatcaaaaagggtctctcatcc 115  Q
    |||| |||| |||| |||||||||||| || || | ||||||||| |||||| ||| ||||||| |||||||||| || |  ||||||||||||| |||     
T  33279194 aaccggtgctgggacgatggactgtaataatgcccttgccgaaactgaaggttatcatgaaaaggcgcaagcataccttag-aaaaagggtctcttatca 33279096  T
Q  116 gctgataggaaatccgggagactagcagaagaaggaagaatcggtacatatcactcgcgattcacacattggtgttctaattgaagtgaacggtgaaacc 215  Q
    ||||| | ||||||||| |  |||  |    |||||||||| |||||||| || || ||||||||||||  |||||||||||||||| ||| ||||||||    
T  33279095 gctgacaagaaatccggcaagctacta----aaggaagaattggtacata-cattcacgattcacacatcagtgttctaattgaagttaactgtgaaacc 33279001  T
Q  216 gactttgttggcagaagtgagaaatt 241  Q
    ||||||| |||||||||| |||||||    
T  33279000 gactttgatggcagaagttagaaatt 33278975  T

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Target: chr6; HSP #9
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 27 - 119
Target Start/End: Original strand, 28872999 - 28873091
Alignment:
Q  27 ggatgatggactgtaagaaagctcgtgccgaaacagaaggtgatcttgaaaagccgcaagcatatctcatcaaaaagggtctctcatccgctg 119  Q
    |||||||||||||||||||||| | |||||||||||||||||||||||||||| || ||||||| ||||   |||||||||||||||| ||||    
T  28872999 ggatgatggactgtaagaaagcccttgccgaaacagaaggtgatcttgaaaaggcgtaagcatacctcagataaaagggtctctcatctgctg 28873091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 182 - 255
Target Start/End: Complemental strand, 33406984 - 33406911
Alignment:
Q  182 cattggtgttctaattgaagtgaacggtgaaaccgactttgttggcagaagtgagaaatttaaggagttggttg 255  Q
    |||| ||||| |||||| |||||||  |||||||||||||||||||||||||||| ||||  ||||||||||||    
T  33406984 cattagtgttataattgtagtgaactatgaaaccgactttgttggcagaagtgagcaattcgaggagttggttg 33406911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 173 - 242
Target Start/End: Complemental strand, 33280426 - 33280357
Alignment:
Q  173 cgattcacacattggtgttctaattgaagtgaacggtgaaaccgactttgttggcagaagtgagaaattt 242  Q
    |||||||| ||||||| ||||| ||||||| ||| |||| || |||||| ||||||||||||||||||||    
T  33280426 cgattcacgcattggttttctatttgaagttaactgtgatactgacttttttggcagaagtgagaaattt 33280357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 132; Significance: 1e-68; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 16 - 274
Target Start/End: Original strand, 17447703 - 17447961
Alignment:
Q  16 aacctgtgcagggatgatggactgtaagaaagctcgtgccgaaacagaaggtgatcttgaaaagccgcaagcatatctcatcaaaaaggg-tctctcatc 114  Q
    |||| |||| ||||| ||||||||||||||||| | ||||||||| |||||||||||||||||| |||||||||| ||||  |||||||| |||||||||    
T  17447703 aaccggtgctgggattatggactgtaagaaagcccttgccgaaactgaaggtgatcttgaaaaggcgcaagcatacctcagaaaaaaggggtctctcatc 17447802  T
Q  115 cgctgataggaaatccgggagactagcagaagaaggaagaatcggtacatatcactcgcgattcacacattggtgttctaattgaagtgaacggtgaaac 214  Q
    |||||||| ||||||||| ||||| ||||  |||||||||||||||||||| || || |||| ||| ||| |||| |||||||||| |||||  ||||||    
T  17447803 cgctgataagaaatccggaagactggcagctgaaggaagaatcggtacata-cattcacgatgcacgcatcggtggtctaattgaattgaactttgaaac 17447901  T
Q  215 cgactttgttggcagaagtgagaaatttaaggagttggttgacgatcttgcaatgcaagt 274  Q
    |||||||||||||||||| |||| ||| |||||||||||||| |||||||||||||||||    
T  17447902 cgactttgttggcagaagggagagattcaaggagttggttgatgatcttgcaatgcaagt 17447961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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