View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16183_low_1 (Length: 551)

Name: NF16183_low_1
Description: NF16183
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16183_low_1
NF16183_low_1
[»] chr5 (3 HSPs)
chr5 (16-532)||(9576167-9576673)
chr5 (305-456)||(42638099-42638250)
chr5 (302-420)||(42630454-42630572)
[»] chr8 (1 HSPs)
chr8 (268-453)||(3368617-3368799)
[»] chr1 (5 HSPs)
chr1 (307-453)||(34287584-34287730)
chr1 (302-397)||(19226212-19226307)
chr1 (305-399)||(361020-361114)
chr1 (352-397)||(19220747-19220792)
chr1 (334-398)||(40399722-40399786)
[»] scaffold0129 (1 HSPs)
scaffold0129 (310-399)||(9590-9679)
[»] chr6 (2 HSPs)
chr6 (307-399)||(287458-287550)
chr6 (313-396)||(21379306-21379389)
[»] chr7 (1 HSPs)
chr7 (352-397)||(25627371-25627416)
[»] chr2 (1 HSPs)
chr2 (307-399)||(16920093-16920185)


Alignment Details
Target: chr5 (Bit Score: 434; Significance: 0; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 434; E-Value: 0
Query Start/End: Original strand, 16 - 532
Target Start/End: Complemental strand, 9576673 - 9576167
Alignment:
Q  16 aatataataactgtaaccaaaagttaggtctaacgatcgcatggtgccatgggagcggaaaaatcagtttaggtttataaattaaacctaataattttgt 115  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9576673 aatataataactgtaaccaaaagttaggtctaatgatcgcatggtgccatgggagcggaaaaatcagtttaggtttataaattaaacctaataattttgt 9576574  T
Q  116 ttctacaaatccaataatccaattactgcaaaaaagtttttccacagagataacgcttaacaggctttctcaggcttctctcaactcgttccgcttgtct 215  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||          |||||||||||||||||||||||    
T  9576573 ttctacaaatccaataatccaattgctgcaaaaaagtttttccacagagataacgcttaacaggctt----------ctctcaactcgttccgcttgtct 9576484  T
Q  216 ttagagtcaagtgtagtgatcaacggatgcagcaaatgaaaaggttagtaataatcacatacatgatgatgttgcctaatttgtcgttttgtcaaaatta 315  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9576483 ttagagtcaagtgtagtgatcaatggatgcagcaaatgaaaaggttagtaataatcacatacatgatgatgttgcctaatttgtcgttttgtcaaaatta 9576384  T
Q  316 cctctcaaatctttgattcgattttgctgtgtacaaaaatcatggactctcttgtttgaaaacccttatttcatgagcatgtataggaggaatttcttat 415  Q
    ||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  9576383 cctttcaaatctttgattcgattttgctgtgtacaaaaattatggactctcttgtttgaaaacccttatttcatgagcatgtttaggaggaatttcttat 9576284  T
Q  416 acaaggatcattcttgttataatgatacatctttcctcctatatctttcgtttggtgtcaagggtatgtttcaacctacattgtattctctttctggtgg 515  Q
    ||||||||||||||| ||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  9576283 acaaggatcattcttattacaatgatacatctttcctcctatatcattcgtttggtgtcaagggtatgtttcaacctacattgtattctcttcctggtgg 9576184  T
Q  516 gaggttagggaatatga 532  Q
    |||||| ||| ||||||    
T  9576183 gaggtttggggatatga 9576167  T

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Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 305 - 456
Target Start/End: Complemental strand, 42638250 - 42638099
Alignment:
Q  305 tgtcaaaattacctctcaaatctttgattcgattttgctgtgtacaaaaatcatggactctcttgtttgaaaacccttatttcatgagcatgtataggag 404  Q
    ||||||| || ||||| ||||| |||| ||||||| | ||||| |  ||||| ||| || ||||||| || || |||||||||| || ||||| | | ||    
T  42638250 tgtcaaagttgcctcttaaatccttgactcgatttggttgtgtgcgtaaatcttggtctttcttgttagataatccttatttcaagaccatgtttcgaag 42638151  T
Q  405 gaatttcttatacaaggatcattcttgttataatgatacatctttcctccta 456  Q
     ||||||||||| ||| ||||||||| ||| |||||||||||| || |||||    
T  42638150 aaatttcttatataagaatcattcttattacaatgatacatctctcttccta 42638099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 302 - 420
Target Start/End: Complemental strand, 42630572 - 42630454
Alignment:
Q  302 ttttgtcaaaattacctctcaaatctttgattcgattttgctgtgtacaaaaatcatggactctcttgtttgaaaacccttatttcatgagcatgtatag 401  Q
    ||||||||||| | ||||| ||||||||| |||||||| | ||||| |  ||||||||| |||| |||||| ||||  |||||||||||| ||||| | |    
T  42630572 ttttgtcaaaacttcctcttaaatctttgtttcgatttggttgtgtgcgtaaatcatggtctcttttgtttaaaaattcttatttcatgaacatgtttcg 42630473  T
Q  402 gaggaatttcttatacaag 420  Q
     | ||||||||||| ||||    
T  42630472 aaagaatttcttatccaag 42630454  T

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Target: chr8 (Bit Score: 56; Significance: 6e-23; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 268 - 453
Target Start/End: Complemental strand, 3368799 - 3368617
Alignment:
Q  268 aatcacatacatgatgatgttgcctaatttgtcgttttgtcaaaattacctctcaaatctttgattcgattttgctgtgtacaaaaatcatggactctct 367  Q
    ||||||||| ||||||| |||||||   | ||| || |||| ||||||||||||||||||||| |||||||| | ||||| |  ||||||||| ||||||    
T  3368799 aatcacatatatgatgacgttgcct---tcgtcattctgtctaaattacctctcaaatctttgtttcgatttcgttgtgtgcgtaaatcatggtctctct 3368703  T
Q  368 tgtttgaaaacccttatttcatgagcatgtataggaggaatttcttatacaaggatcattcttgttataatgatacatctttcctc 453  Q
    | |||||||||||||||||||||  |||||   | || | ||| ||||  ||| ||||||||| ||| |||||||||||| |||||    
T  3368702 tatttgaaaacccttatttcatggacatgttccgaagaatttttttatctaagaatcattcttattacaatgatacatctctcctc 3368617  T

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Target: chr1 (Bit Score: 51; Significance: 6e-20; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 307 - 453
Target Start/End: Original strand, 34287584 - 34287730
Alignment:
Q  307 tcaaaattacctctcaaatctttgattcgattttgctgtgtacaaaaatcatggactctcttgtttgaaaacccttatttcatgagcatgtataggagga 406  Q
    ||||||||||||||||||||| |  |||||||||| ||  |||  ||||||||| |||  ||||||||||||||||||||||||| ||| | | | || |    
T  34287584 tcaaaattacctctcaaatctatctttcgattttgttgcatacgcaaatcatggtctccattgtttgaaaacccttatttcatgaacatctttcgaagaa 34287683  T
Q  407 atttcttatacaaggatcattcttgttataatgatacatctttcctc 453  Q
    ||||||||| ||| |||||||| | ||| || ||||||||| |||||    
T  34287684 atttcttatccaatgatcattcatattacaacgatacatctctcctc 34287730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 302 - 397
Target Start/End: Complemental strand, 19226307 - 19226212
Alignment:
Q  302 ttttgtcaaaattacctctcaaatctttgattcgattttgctgtgtacaaaaatcatggactctcttgtttgaaaacccttatttcatgagcatgt 397  Q
    ||||||||||| ||||| | |||||| | | |||||||   ||||||   ||||| |||||||| |||||||||||| |||||||||||| |||||    
T  19226307 ttttgtcaaaactacctttgaaatctgtaaatcgatttacttgtgtatgcaaatcgtggactcttttgtttgaaaactcttatttcatgaacatgt 19226212  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 305 - 399
Target Start/End: Original strand, 361020 - 361114
Alignment:
Q  305 tgtcaaaattacctctcaaatctttgattcgattttgctgtgtacaaaaatcatggactctcttgtttgaaaacccttatttcatgagcatgtat 399  Q
    ||||||| || ||||| |||||||||  ||||||    |||||||| |||||||||  | | || |||||||||||||||||||||| |||||||    
T  361020 tgtcaaagttgcctctaaaatctttgcatcgattcaaatgtgtacacaaatcatgggttatgttatttgaaaacccttatttcatgaacatgtat 361114  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 352 - 397
Target Start/End: Original strand, 19220747 - 19220792
Alignment:
Q  352 aaatcatggactctcttgtttgaaaacccttatttcatgagcatgt 397  Q
    ||||| |||||||| |||||||||||| |||||||||||| |||||    
T  19220747 aaatcgtggactcttttgtttgaaaactcttatttcatgaacatgt 19220792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 334 - 398
Target Start/End: Complemental strand, 40399786 - 40399722
Alignment:
Q  334 cgattttgctgtgtacaaaaatcatggactctcttgtttgaaaacccttatttcatgagcatgta 398  Q
    |||||||  ||||| || |||||||||||||| || || ||||||||| ||||||||| ||||||    
T  40399786 cgattttcttgtgttcacaaatcatggactcttttattcgaaaaccctaatttcatgaacatgta 40399722  T

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Target: scaffold0129 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0129
Description:

Target: scaffold0129; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 310 - 399
Target Start/End: Original strand, 9590 - 9679
Alignment:
Q  310 aaattacctctcaaatctttgattcgattttgctgtgtacaaaaatcatggactctcttgtttgaaaacccttatttcatgagcatgtat 399  Q
    ||||| ||||| ||||||||||  |||||| | |||||||| ||||||||| ||| ||| |||||||||||| ||||||||| |||||||    
T  9590 aaattgcctcttaaatctttgaaacgatttagttgtgtacataaatcatggtctcgcttatttgaaaaccctaatttcatgaacatgtat 9679  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 307 - 399
Target Start/End: Complemental strand, 287550 - 287458
Alignment:
Q  307 tcaaaattacctctcaaatctttgattcgattttgctgtgtacaaaaatcatggactctcttgtttgaaaacccttatttcatgagcatgtat 399  Q
    |||||||| ||||| |||||||| |  |||||| | ||||||   |||||||||||||||||||||||||| | | | ||||||| |||||||    
T  287550 tcaaaattgcctctaaaatctttaaaacgatttggatgtgtatgtaaatcatggactctcttgtttgaaaatcttcacttcatgaccatgtat 287458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 313 - 396
Target Start/End: Complemental strand, 21379389 - 21379306
Alignment:
Q  313 ttacctctcaaatctttgattcgattttgctgtgtacaaaaatcatggactctcttgtttgaaaacccttatttcatgagcatg 396  Q
    |||||||| ||||||||||  |||||| | || || |  ||||||||| ||||||| ||||||||| |||||||||||| ||||    
T  21379389 ttacctcttaaatctttgaagcgatttggatgcgtccgtaaatcatggtctctcttatttgaaaacacttatttcatgaacatg 21379306  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 352 - 397
Target Start/End: Original strand, 25627371 - 25627416
Alignment:
Q  352 aaatcatggactctcttgtttgaaaacccttatttcatgagcatgt 397  Q
    ||||||||| ||||||| ||||||||||||| |||||||| |||||    
T  25627371 aaatcatggtctctcttatttgaaaacccttctttcatgaccatgt 25627416  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 307 - 399
Target Start/End: Original strand, 16920093 - 16920185
Alignment:
Q  307 tcaaaattacctctcaaatctttgattcgattttgctgtgtacaaaaatcatggactctcttgtttgaaaacccttatttcatgagcatgtat 399  Q
    |||| ||||||||| ||||||||||  |||||| | || ||||  ||||||||| |  | ||||||||||||| | ||||||||| |||||||    
T  16920093 tcaacattacctctaaaatctttgaagcgatttggatgcgtacgtaaatcatgggcctttttgtttgaaaaccttcatttcatgaccatgtat 16920185  T

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