View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16183_low_3 (Length: 231)
Name: NF16183_low_3
Description: NF16183
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16183_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 174; Significance: 9e-94; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 174; E-Value: 9e-94
Query Start/End: Original strand, 16 - 217
Target Start/End: Complemental strand, 35512387 - 35512186
Alignment:
| Q |
16 |
gaaccatctttgcttaaagcaacaccattgggnnnnnnnnggccacttaataagacctttacttctttactcgacttatcgtatttcattaaccgtccag |
115 |
Q |
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| T |
35512387 |
gaaccatctttgcttaaagcaacaccattgggaaaaaaaaggccacttaataagacctttacttctttactcgacttatcgtatttcattaaccgtccag |
35512288 |
T |
|
| Q |
116 |
tcttgtctccactaagagttacaagcatatgttgcctgcagacaaaagtgaccaacatatagatcaaaatttctctacaaagcgaagttttcagttatat |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
35512287 |
tcttgtctccactaagagttacaagcatatgttgcctgcagacaaaagtgaccaacatatagatcaaaatttctctacaaagagaagttttcagttatat |
35512188 |
T |
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| Q |
216 |
tt |
217 |
Q |
| |
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|| |
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| T |
35512187 |
tt |
35512186 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 16 - 190
Target Start/End: Complemental strand, 35503755 - 35503581
Alignment:
| Q |
16 |
gaaccatctttgcttaaagcaacaccattgggnnnnnnnnggccacttaataagacctttacttctttactcgacttatcgtatttcattaaccgtccag |
115 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||| || |||||||| | |||||||| ||||||||||||| |||| |
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| T |
35503755 |
gaaccatctttgcttaaagcaacaccattgggaaaagcaaggccacttaataagactttcacttcttttgttgacttatcatatttcattaacctcccag |
35503656 |
T |
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| Q |
116 |
tcttgtctccactaagagttacaagcatatgttgcctgcagacaaaagtgaccaacatatagatcaaaatttctc |
190 |
Q |
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||||||||||||||||| |||||||||| ||||||| | | |||||| ||||||||||| ||||||||||||| |
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| T |
35503655 |
tcttgtctccactaagaagtacaagcataaattgcctgtaaataaaagtaaccaacatataaatcaaaatttctc |
35503581 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 16 - 130
Target Start/End: Complemental strand, 35490920 - 35490806
Alignment:
| Q |
16 |
gaaccatctttgcttaaagcaacaccattgggnnnnnnnnggccacttaataagacctttacttctttactcgacttatcgtatttcattaaccgtccag |
115 |
Q |
| |
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||||||||||||||||||||||||||||| || |||| |||||||||||||| |||||||| | |||||||| ||||||||||||| |||| |
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| T |
35490920 |
gaaccatctttgcttaaagcaacaccattaggaaaagcaaggcctcttaataagaccttcacttctttggttgacttatcatatttcattaacctcccag |
35490821 |
T |
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| Q |
116 |
tcttgtctccactaa |
130 |
Q |
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||||||| ||||||| |
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| T |
35490820 |
tcttgtcgccactaa |
35490806 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 97 - 181
Target Start/End: Complemental strand, 35497342 - 35497258
Alignment:
| Q |
97 |
tatttcattaaccgtccagtcttgtctccactaagagttacaagcatatgttgcctgcagacaaaagtgaccaacatatagatca |
181 |
Q |
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| T |
35497342 |
tatttcattaaccttccagtcttgtctccactaacaaataaaagcgtatattgcctgcaaataaaagtgaccaacatatagatca |
35497258 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 56 - 181
Target Start/End: Complemental strand, 40161387 - 40161262
Alignment:
| Q |
56 |
ggccacttaataagacctttacttctttactcgacttatcgtatttcattaaccgtccagtcttgtctccactaagagttacaagcatatgttgcctgca |
155 |
Q |
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||||||||||||||||||| |||||||| | ||||| | ||||||||||||| |||||| ||||||||||| ||| || |||| | |||||| || |
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| T |
40161387 |
ggccacttaataagaccttcacttcttttgttgacttcacatatttcattaaccttccagttttgtctccacttagaagtaaaagcggaatttgcctaca |
40161288 |
T |
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| Q |
156 |
gacaaaagtgaccaacatatagatca |
181 |
Q |
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|||||| |||||||||||||||||| |
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| T |
40161287 |
aacaaaaatgaccaacatatagatca |
40161262 |
T |
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