View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16184_high_1 (Length: 709)

Name: NF16184_high_1
Description: NF16184
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16184_high_1
NF16184_high_1
[»] chr4 (6 HSPs)
chr4 (20-701)||(28787960-28788634)
chr4 (603-701)||(24856237-24856335)
chr4 (603-698)||(24853349-24853444)
chr4 (567-701)||(51246622-51246749)
chr4 (603-691)||(28787018-28787106)
chr4 (567-701)||(17525460-17525589)
[»] scaffold0406 (1 HSPs)
scaffold0406 (603-701)||(6280-6378)
[»] chr7 (1 HSPs)
chr7 (603-701)||(22622375-22622473)
[»] chr5 (5 HSPs)
chr5 (622-701)||(5046448-5046527)
chr5 (622-701)||(5047219-5047298)
chr5 (622-701)||(5047990-5048069)
chr5 (603-660)||(5664821-5664877)
chr5 (634-694)||(5663780-5663840)
[»] chr8 (1 HSPs)
chr8 (603-693)||(1275201-1275291)
[»] chr2 (2 HSPs)
chr2 (567-701)||(20978804-20978940)
chr2 (607-695)||(33798848-33798936)
[»] chr3 (3 HSPs)
chr3 (622-701)||(12738191-12738270)
chr3 (622-701)||(12739342-12739421)
chr3 (657-701)||(15023059-15023103)
[»] chr1 (4 HSPs)
chr1 (603-701)||(22055466-22055563)
chr1 (601-701)||(29371903-29372004)
chr1 (629-701)||(22056567-22056638)
chr1 (567-599)||(22056518-22056550)
[»] scaffold0272 (1 HSPs)
scaffold0272 (603-642)||(3559-3598)


Alignment Details
Target: chr4 (Bit Score: 596; Significance: 0; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 596; E-Value: 0
Query Start/End: Original strand, 20 - 701
Target Start/End: Complemental strand, 28788634 - 28787960
Alignment:
Q  20 gctcacctaaaaattggtgttcttctagcttaagtcttaatcaaataattataatttgtgtgcttaatcaacatgttataaaatctcattatggaatcat 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  28788634 gctcacctaaaaattggtgttcttctagcttaagtcttaatcaaataattataatttgtgtgcttaatcaacatgttatcaaatctcattatggaatcat 28788535  T
Q  120 gttattattcaaggaagttattatgacaagattgatacaactaaaaaacgtgagatgacattgacccactacttctgatttctgcacgtaaaatacaatc 219  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||   |||||    
T  28788534 gttattattcaaggaagttattatgacaagattgatacaactaaaaaatgcgagatgacattgacccactacttctgatttctgcacgtaaa---caatc 28788438  T
Q  220 acttaataataatgaaatacttaggagtttgcttcaacttaggatgacacacgatgatgattgagtaataagattgaaatgaaatttttcacttaaattt 319  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28788437 acttaataataatgaaatacttaggagtttgcttcaacttaggatgacacacgatgatgattgagtaataagattgaaatgaaatttttcacttaaattt 28788338  T
Q  320 caaagtagcagtacaatttaaggtatacaatatgtcaatatctatctctggtaacaaccagttttatggaaagcagcaagtacatacaagaaataaatag 419  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||    
T  28788337 caaagtagcagtacaatttaaggtatacaatatgttaatatctatctctggtaacaacgagttttatggaaagcaacaagtacatacaagaaataaatag 28788238  T
Q  420 aagaaaacaagctgcatagtagacttctgttggnnnnnnnntaaaatatatatagcctagggagctgtagtggtggagaggatagcttagggagctgtag 519  Q
    |||||||||||||||||||||||||||||||||         || |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28788237 aagaaaacaagctgcatagtagacttctgttggaaaaa----aatatatatatagcctagggagctgtagtggtggagaggatagcttagggagctgtag 28788142  T
Q  520 tggtggagagaatagtagtaaggataagagtacacacattagaaattaggagagaatatcatatggtgaagccttcaatattaaatattattgacattgc 619  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  28788141 tggtggagagaatagtagtaaggataagaggacacacattagaaattaggagagaatatcatgtggtgaagccttcaatattaaatattattgacattgc 28788042  T
Q  620 atcttaaaggcttgaatacaattgcacccatatatgtctatttataggtgtttgaaaatgtttctagaactagaataatcta 701  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  28788041 atcttaaaggcttgaatacaattgcacccatatatgtctatttataggtgtttgaagatgtttctagaactagaataatcta 28787960  T

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Target: chr4; HSP #2
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 603 - 701
Target Start/End: Complemental strand, 24856335 - 24856237
Alignment:
Q  603 aatattattgacattgcatcttaaaggcttgaatacaattgcacccatatatgtctatttataggtgtttgaaaatgtttctagaactagaataatcta 701  Q
    ||||||||||||||||||||||||||||| ||||||||||||| ||  ||| ||||||||||||||||| |||||||||||||||||||||||||||||    
T  24856335 aatattattgacattgcatcttaaaggctggaatacaattgcatcctaataagtctatttataggtgttagaaaatgtttctagaactagaataatcta 24856237  T

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Target: chr4; HSP #3
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 603 - 698
Target Start/End: Complemental strand, 24853444 - 24853349
Alignment:
Q  603 aatattattgacattgcatcttaaaggcttgaatacaattgcacccatatatgtctatttataggtgtttgaaaatgtttctagaactagaataat 698  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||| ||| ||||||||||||||||| ||| |||||| |||||||||||||||    
T  24853444 aatattattgacattgcatcttaaaggcttgaatacaattgcatccaaataagtctatttataggtgttagaagatgtttttagaactagaataat 24853349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 567 - 701
Target Start/End: Complemental strand, 51246749 - 51246622
Alignment:
Q  567 aggagagaatatcatatggtgaagccttcaatattaaatattattgacattgcatcttaaaggcttgaatacaattgcacccatatatgtctatttatag 666  Q
    |||||||||||| || ||||||||||||||||||||       |||||||| ||||  ||||||||||||||||||||||||||||| ||||| ||||||    
T  51246749 aggagagaatatgatttggtgaagccttcaatatta-------ttgacattacatcccaaaggcttgaatacaattgcacccatataagtctacttatag 51246657  T
Q  667 gtgtttgaaaatgtttctagaactagaataatcta 701  Q
    ||| ||| | |||||||||||||||||||||||||    
T  51246656 gtgcttgtagatgtttctagaactagaataatcta 51246622  T

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Target: chr4; HSP #5
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 603 - 691
Target Start/End: Complemental strand, 28787106 - 28787018
Alignment:
Q  603 aatattattgacattgcatcttaaaggcttgaatacaattgcacccatatatgtctatttataggtgtttgaaaatgtttctagaacta 691  Q
    ||||||||  ||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||| ||||| |||||||||||||||    
T  28787106 aatattatatacattgcatctaaaaggcttgaatacaattgcaccaatatatgtctatttataggtgcttgaagatgtttctagaacta 28787018  T

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Target: chr4; HSP #6
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 567 - 701
Target Start/End: Original strand, 17525460 - 17525589
Alignment:
Q  567 aggagagaatatcatatggtgaagccttcaatattaaatattattgaca--ttgcatcttaaaggcttgaatacaattgcacccatatatgtctatttat 664  Q
    |||||||||||| |||||||||||||||||||||||       ||||||  |||||||| |||||||||||||||||| ||| |||||| ||||||||||    
T  17525460 aggagagaatatgatatggtgaagccttcaatatta-------ttgacacattgcatctcaaaggcttgaatacaatttcacacatataagtctatttat 17525552  T
Q  665 aggtgtttgaaaatgtttctagaactagaataatcta 701  Q
    | | | ||| | |||||||||||||||||||||||||    
T  17525553 aagcgcttgtagatgtttctagaactagaataatcta 17525589  T

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Target: scaffold0406 (Bit Score: 75; Significance: 4e-34; HSPs: 1)
Name: scaffold0406
Description:

Target: scaffold0406; HSP #1
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 603 - 701
Target Start/End: Complemental strand, 6378 - 6280
Alignment:
Q  603 aatattattgacattgcatcttaaaggcttgaatacaattgcacccatatatgtctatttataggtgtttgaaaatgtttctagaactagaataatcta 701  Q
    ||||||||||||||||||||| |||||||||||||||||| |||||||||| ||||||||||||||| |||||  ||||||||||||||||||||||||    
T  6378 aatattattgacattgcatctcaaaggcttgaatacaatttcacccatataagtctatttataggtgcttgaagctgtttctagaactagaataatcta 6280  T

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Target: chr7 (Bit Score: 63; Significance: 5e-27; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 603 - 701
Target Start/End: Original strand, 22622375 - 22622473
Alignment:
Q  603 aatattattgacattgcatcttaaaggcttgaatacaattgcacccatatatgtctatttataggtgtttgaaaatgtttctagaactagaataatcta 701  Q
    |||||||||||||| |||||| ||||||||||||||||||||||||||||| | ||||||||| |||  |||| |||||||||||| ||||||||||||    
T  22622375 aatattattgacatggcatctcaaaggcttgaatacaattgcacccatataagcctatttataagtgcctgaagatgtttctagaattagaataatcta 22622473  T

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Target: chr5 (Bit Score: 56; Significance: 8e-23; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 622 - 701
Target Start/End: Complemental strand, 5046527 - 5046448
Alignment:
Q  622 cttaaaggcttgaatacaattgcacccatatatgtctatttataggtgtttgaaaatgtttctagaactagaataatcta 701  Q
    ||||||||||||||||||||||||| |||||| ||||||||||||||| ||| | ||||||||| |||||||||||||||    
T  5046527 cttaaaggcttgaatacaattgcactcatataagtctatttataggtgcttgtagatgtttctaaaactagaataatcta 5046448  T

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Target: chr5; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 622 - 701
Target Start/End: Complemental strand, 5047298 - 5047219
Alignment:
Q  622 cttaaaggcttgaatacaattgcacccatatatgtctatttataggtgtttgaaaatgtttctagaactagaataatcta 701  Q
    ||||||||||||||||||||||||| |||||| || |||||||||||| ||| | ||||||||| |||||||||||||||    
T  5047298 cttaaaggcttgaatacaattgcactcatataagtatatttataggtgcttgtagatgtttctaaaactagaataatcta 5047219  T

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Target: chr5; HSP #3
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 622 - 701
Target Start/End: Complemental strand, 5048069 - 5047990
Alignment:
Q  622 cttaaaggcttgaatacaattgcacccatatatgtctatttataggtgtttgaaaatgtttctagaactagaataatcta 701  Q
    ||||||||||||||||||||||||| |||||| || |||||||||||| ||| | |||||| || |||||||||||||||    
T  5048069 cttaaaggcttgaatacaattgcactcatataagtatatttataggtgcttgtagatgtttttaaaactagaataatcta 5047990  T

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Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 603 - 660
Target Start/End: Original strand, 5664821 - 5664877
Alignment:
Q  603 aatattattgacattgcatcttaaaggcttgaatacaattgcacccatatatgtctat 660  Q
    |||||||||| ||||| || ||||| ||||||||||||||||||||||||| ||||||    
T  5664821 aatattattgtcattgtat-ttaaaagcttgaatacaattgcacccatataagtctat 5664877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 634 - 694
Target Start/End: Original strand, 5663780 - 5663840
Alignment:
Q  634 aatacaattgcacccatatatgtctatttataggtgtttgaaaatgtttctagaactagaa 694  Q
    |||||||| |||||||||||  |||||||||| ||| ||||| ||||||||| ||||||||    
T  5663780 aatacaatcgcacccatataattctatttataagtgattgaagatgtttctaaaactagaa 5663840  T

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Target: chr8 (Bit Score: 55; Significance: 3e-22; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 603 - 693
Target Start/End: Original strand, 1275201 - 1275291
Alignment:
Q  603 aatattattgacattgcatcttaaaggcttgaatacaattgcacccatatatgtctatttataggtgtttgaaaatgtttctagaactaga 693  Q
    ||||||||||||||||||||||||| | |||||||||||||||||||||||  | || ||||||||| |||||  ||||||||||||||||    
T  1275201 aatattattgacattgcatcttaaacgtttgaatacaattgcacccatatacctatacttataggtgcttgaaggtgtttctagaactaga 1275291  T

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Target: chr2 (Bit Score: 49; Significance: 1e-18; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 567 - 701
Target Start/End: Original strand, 20978804 - 20978940
Alignment:
Q  567 aggagagaatatcatatggtgaagccttcaatattaaatattattgacattgcatct--------taaaggcttgaatacaattgcacccatatatgtct 658  Q
    |||||||||||| |||||||||||||||||||||||       ||||||||||||||        |||||||||||||| ||| ||||||||||| || |    
T  20978804 aggagagaatatgatatggtgaagccttcaatatta-------ttgacattgcatctcaaaggtttaaaggcttgaatataatggcacccatataagttt 20978896  T
Q  659 atttataggt-gtttgaaaatgtttctagaactagaataatcta 701  Q
    ||||||||||  |||| | |||||||||||||||||||||||||    
T  20978897 atttataggtactttgtagatgtttctagaactagaataatcta 20978940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 607 - 695
Target Start/End: Original strand, 33798848 - 33798936
Alignment:
Q  607 ttattgacattgcatcttaaaggcttgaatacaattgcacccatatatgtctatttataggtgtttgaaaatgtttctagaactagaat 695  Q
    |||||||| || ||||| ||||||||||||||||||||||  ||   | ||||||||||| |  ||||| |||||||||||| ||||||    
T  33798848 ttattgacgttacatctcaaaggcttgaatacaattgcacatatgcttatctatttatagatccttgaagatgtttctagaagtagaat 33798936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 48; Significance: 5e-18; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 622 - 701
Target Start/End: Complemental strand, 12738270 - 12738191
Alignment:
Q  622 cttaaaggcttgaatacaattgcacccatatatgtctatttataggtgtttgaaaatgtttctagaactagaataatcta 701  Q
    |||||||||||||||||||||||||||| ||| || |||||||||||| ||| | ||||||||||||||| ||| |||||    
T  12738270 cttaaaggcttgaatacaattgcacccaaataagtttatttataggtgcttgtagatgtttctagaactaaaattatcta 12738191  T

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Target: chr3; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 622 - 701
Target Start/End: Complemental strand, 12739421 - 12739342
Alignment:
Q  622 cttaaaggcttgaatacaattgcacccatatatgtctatttataggtgtttgaaaatgtttctagaactagaataatcta 701  Q
    |||||||||||||||||||||||| ||| |||  ||||||||||| || ||| | ||||||||||||||| |||||||||    
T  12739421 cttaaaggcttgaatacaattgcatccaaataattctatttatagatgcttgtagatgtttctagaactaaaataatcta 12739342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 657 - 701
Target Start/End: Complemental strand, 15023103 - 15023059
Alignment:
Q  657 ctatttataggtgtttgaaaatgtttctagaactagaataatcta 701  Q
    ||||||||||||| ||| | ||||||||||||||| |||||||||    
T  15023103 ctatttataggtgcttgtagatgtttctagaactaaaataatcta 15023059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 603 - 701
Target Start/End: Original strand, 22055466 - 22055563
Alignment:
Q  603 aatattattgacattgcatcttaaaggcttgaatacaattgcacccatatatgtctatttataggtgtttgaaaatgtttctagaactagaataatcta 701  Q
    |||||||| |||||||||||| |||||||||| ||||||||||||  |  | ||||||||||| ||| ||||| ||| ||||||||||| |||||||||    
T  22055466 aatattatcgacattgcatctgaaaggcttgactacaattgcaccattcca-gtctatttataagtgcttgaagatgattctagaactaaaataatcta 22055563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 601 - 701
Target Start/End: Complemental strand, 29372004 - 29371903
Alignment:
Q  601 taaatattattgacattgcatcttaaaggcttgaatacaatt-gcacccatatatgtctatttataggtgtttgaaaatgtttctagaactagaataatc 699  Q
    ||||| || |||| |||| |||||||||||||  |||||||| |||||||||||  |||||||||| ||| ||||| |||||| ||  ||| ||||||||    
T  29372004 taaatgttcttgatattgtatcttaaaggcttacatacaatttgcacccatataaatctatttataagtgcttgaagatgtttataatacttgaataatc 29371905  T
Q  700 ta 701  Q
    ||    
T  29371904 ta 29371903  T

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Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 629 - 701
Target Start/End: Original strand, 22056567 - 22056638
Alignment:
Q  629 gcttgaatacaattgcacccatatatgtctatttataggtgtttgaaaatgtttctagaactagaataatcta 701  Q
    |||||||| ||||||||||  | || |||| |||||||||| ||||| || ||||||||||||||||||||||    
T  22056567 gcttgaatgcaattgcaccttt-taagtctctttataggtgcttgaagatatttctagaactagaataatcta 22056638  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 567 - 599
Target Start/End: Original strand, 22056518 - 22056550
Alignment:
Q  567 aggagagaatatcatatggtgaagccttcaata 599  Q
    |||||||||||| ||||||||||||||||||||    
T  22056518 aggagagaatataatatggtgaagccttcaata 22056550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0272 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0272
Description:

Target: scaffold0272; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 603 - 642
Target Start/End: Original strand, 3559 - 3598
Alignment:
Q  603 aatattattgacattgcatcttaaaggcttgaatacaatt 642  Q
    ||||||||||||||||||||| ||||| ||||||||||||    
T  3559 aatattattgacattgcatctcaaaggtttgaatacaatt 3598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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