View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16184_high_6 (Length: 283)
Name: NF16184_high_6
Description: NF16184
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16184_high_6 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 137; Significance: 1e-71; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 125 - 273
Target Start/End: Complemental strand, 31524578 - 31524430
Alignment:
| Q |
125 |
aagtggaacaattgtagaagttgttgttttgtaagagttgttgacatcatttgaattgaaagaagcattttggcctttggcatttcgaattaagatgcgt |
224 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
31524578 |
aagtggaacaattgtagaagttgttgttttgtaagagttgttgatatcatttgaattgaaagaagcattttggcctttggcattttgaattaagatgcgt |
31524479 |
T |
|
| Q |
225 |
tgtttggttctgttcttgcaatacaaatgattaaacatgtgtgcctatg |
273 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31524478 |
cgtttggttctgttcttgcaatacaaatgattaaacatgtgtgcctatg |
31524430 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 137; Significance: 1e-71; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 125 - 273
Target Start/End: Original strand, 33366922 - 33367070
Alignment:
| Q |
125 |
aagtggaacaattgtagaagttgttgttttgtaagagttgttgacatcatttgaattgaaagaagcattttggcctttggcatttcgaattaagatgcgt |
224 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
33366922 |
aagtggaacaattgtagaagttgttgttttgtaagagttgttgatatcatttgaattgaaagaagcattttggcctttggcattttgaattaagatgcgt |
33367021 |
T |
|
| Q |
225 |
tgtttggttctgttcttgcaatacaaatgattaaacatgtgtgcctatg |
273 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33367022 |
cgtttggttctgttcttgcaatacaaatgattaaacatgtgtgcctatg |
33367070 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 137; Significance: 1e-71; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 125 - 273
Target Start/End: Complemental strand, 49194536 - 49194388
Alignment:
| Q |
125 |
aagtggaacaattgtagaagttgttgttttgtaagagttgttgacatcatttgaattgaaagaagcattttggcctttggcatttcgaattaagatgcgt |
224 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
49194536 |
aagtggaacaattgtagaagttgttgttttgtaagagttgttgatatcatttgaattgaaagaagcattttggcctttggcattttgaattaagatgcgt |
49194437 |
T |
|
| Q |
225 |
tgtttggttctgttcttgcaatacaaatgattaaacatgtgtgcctatg |
273 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49194436 |
cgtttggttctgttcttgcaatacaaatgattaaacatgtgtgcctatg |
49194388 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University