View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16184_high_7 (Length: 238)
Name: NF16184_high_7
Description: NF16184
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16184_high_7 |
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Alignment Details
Target: chr8 (Bit Score: 187; Significance: 1e-101; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 14 - 220
Target Start/End: Complemental strand, 41369884 - 41369678
Alignment:
| Q |
14 |
caaaggagaatgaaaatccaagctagagatgaaaaatttatttcacaagcagcagaagaacaaatatttcctgctctaaataacaaagaagaatattgcg |
113 |
Q |
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| T |
41369884 |
caaaggagcatgaaaatccaagctagagataaaaaaaatatttcacaagcagcagaagaacaaatttttcctgctctaaataacaaagaagaatattgcg |
41369785 |
T |
|
| Q |
114 |
ctacctgtatggaagactattctcacctgagcgaatcggaagattctattaaggtgccaagttaccctttgtatcaagggagcttgaaaattcaacatag |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41369784 |
ctacctgtatggaagactattctcacctgagcgaatcggaagattctattaaggtgccaagttaccctttgtatcaagggagcttgaaaattcaacatag |
41369685 |
T |
|
| Q |
214 |
agattta |
220 |
Q |
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||||||| |
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| T |
41369684 |
agattta |
41369678 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 75; Significance: 1e-34; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 26 - 220
Target Start/End: Original strand, 24693731 - 24693925
Alignment:
| Q |
26 |
aaaatccaagctagagatgaaaaatttatttcacaagcagcagaagaacaaatatttcctgctctaaataacaaagaagaatattgcgctacctgtatgg |
125 |
Q |
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||||||||| ||||||||||| || |||||| ||||| ||||||||| ||||| |||||||| || | |||||| ||||||||| | ||||||| | |
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| T |
24693731 |
aaaatccaacctagagatgaacaaattattttacaagtagcagaagagcaaatttttcctgccatatacgacaaaggagaatattgtgaaacctgtacag |
24693830 |
T |
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| Q |
126 |
aagactattctcacctgagcgaatcggaagattctattaaggtgccaagttaccctttgtatcaagggagcttgaaaattcaacatagagattta |
220 |
Q |
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| T |
24693831 |
aagactattctcacctgagtgaatctgaagattctattaaggttttgagttaccctatgcatcaagggagcttggaaaaccaacctagagattta |
24693925 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 103 - 217
Target Start/End: Complemental strand, 24479285 - 24479171
Alignment:
| Q |
103 |
agaatattgcgctacctgtatggaagactattctcacctgagcgaatcggaagattctattaaggtgccaagttaccctttgtatcaagggagcttgaaa |
202 |
Q |
| |
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||||||||| ||||| |||| |||||||||||||||||||| ||||| ||||||||||||||||| | | |||| ||||||||||||||||||| |
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| T |
24479285 |
agaatattgtgctacttgtacagaagactattctcacctgagtgaatccaaagattctattaaggtgttgaataaccccaagtatcaagggagcttgaaa |
24479186 |
T |
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| Q |
203 |
attcaacatagagat |
217 |
Q |
| |
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|| |||||||||||| |
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| T |
24479185 |
atccaacatagagat |
24479171 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 143 - 220
Target Start/End: Complemental strand, 24455850 - 24455773
Alignment:
| Q |
143 |
agcgaatcggaagattctattaaggtgccaagttaccctttgtatcaagggagcttgaaaattcaacatagagattta |
220 |
Q |
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||||| || |||||||||||||||| ||||||||||||| | ||||||||||||||||||| |||| ||||||||| |
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| T |
24455850 |
agcgactctgaagattctattaaggggccaagttaccctataaatcaagggagcttgaaaatccaaccgagagattta |
24455773 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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