View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16184_low_1 (Length: 790)
Name: NF16184_low_1
Description: NF16184
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16184_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 680; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 680; E-Value: 0
Query Start/End: Original strand, 25 - 778
Target Start/End: Original strand, 44828284 - 44829036
Alignment:
| Q |
25 |
ggcaaaatattgatannnnnnncttgtatttaccatgcaacgacgacagtaaaagttgtcaaaagtatctaaagagacactcaagcttttgttcaaaaat |
124 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44828284 |
ggcaaaatattgatatttttttcttgtatttaccatgcaacgacgacagtaaaagttgtcaaaagtatctaaagagacactcaagcttttgttcaaaaat |
44828383 |
T |
|
| Q |
125 |
gtatcagtctgagattcactttctctacgatcttcatcattttggtccttttccttgatatttttatatcgctcctgcatattttgattgagaacatttg |
224 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44828384 |
gtatcagtctgagattcactttctctacgatcttcatcattttggtccttttccttgatatttttatatcgctcctgcatattttgattgagaacatttg |
44828483 |
T |
|
| Q |
225 |
tccatgacataaaattagctgctcgtacgcaattaatacaacacatatcacaaagaaacttatatttgtaatacatattagaattaacaatcatcaaagc |
324 |
Q |
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|||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
44828484 |
tccatgacataaaattagctgctcatacgtaattaatacaacacatatcacaaagaaacttatttttgtaatacatattagaattaacaatcatcaaagc |
44828583 |
T |
|
| Q |
325 |
tatattaatcttgtaaattactctacgttacctgaatttctgaactggtacctccgatgacatccttaacaatactcaacacttcctcagttaaaccatg |
424 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44828584 |
tatattaatcttgtaaattactctacattacctgaatttctgaactggtacctccgatgacatccttaacaatactcaacacttcctcagttaaaccatg |
44828683 |
T |
|
| Q |
425 |
ttcatcaaataccgtcctaatatattaaatagtcacaagataatatgtttagttaaggagaaacttaaattattttaatgaagtagataaaatgatgcac |
524 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44828684 |
ttcatcaaataccgtcctaatatattaaatagtcacaagataatatgtttagttaaggagaaacttaaattattttaatgaagtagataaaatgatgcac |
44828783 |
T |
|
| Q |
525 |
aataagtagaannnnnnnggaggtccagcaaaacatgtattacatatgaattaaatttgaaatttaagaaatttacatctttaactctactgataaatta |
624 |
Q |
| |
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| T |
44828784 |
aataagtagaatttttttggaggtccagcaaaacatgtattacatatcaattaaatttgaaatttaag-aatttacatctttaattctactgataaatta |
44828882 |
T |
|
| Q |
625 |
aatagaacttctaaatgtaagtataataacatgtacattttgatttacctaataaatcggtcttcaccctgagaaaatttacgttcaacttccttgtcct |
724 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44828883 |
aatagaacttctaaatgtaagtataataacatgtacattttgatttacctaataaatcggtcttcaccctgagaaaatttacgttcaacttccttgtcct |
44828982 |
T |
|
| Q |
725 |
cgtttgactcttcatcactatcactgcatactaatgtttcaccttcctgatgat |
778 |
Q |
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|
| T |
44828983 |
cgtttgactcttcatcactatcactgcatactaatgtttcaccttcctgatgat |
44829036 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 48; Significance: 5e-18; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 102 - 225
Target Start/End: Original strand, 8370640 - 8370763
Alignment:
| Q |
102 |
cactcaagcttttgttcaaaaatgtatcagtctgagattcactttctctacgatcttcatcattttggtccttttccttgatatttttatatcgctcctg |
201 |
Q |
| |
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|||| ||||||||||||||| || | ||||| |||| | || |||||| | ||||||| || ||||||||||||||||||||||| ||| ||||||| |
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| T |
8370640 |
cacttaagcttttgttcaaatatatctcagtttgaggtccattttctccaaaatcttcagaatgttggtccttttccttgatattttgataatgctcctg |
8370739 |
T |
|
| Q |
202 |
catattttgattgagaacatttgt |
225 |
Q |
| |
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|||||||||||||| || |||||| |
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| T |
8370740 |
catattttgattgaaaatatttgt |
8370763 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 102 - 225
Target Start/End: Original strand, 8372042 - 8372165
Alignment:
| Q |
102 |
cactcaagcttttgttcaaaaatgtatcagtctgagattcactttctctacgatcttcatcattttggtccttttccttgatatttttatatcgctcctg |
201 |
Q |
| |
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|||||||||||||||||||| || | ||||| |||||| || |||||| | ||||||| || ||| || |||||| | |||||| ||| |||||||| |
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| T |
8372042 |
cactcaagcttttgttcaaacatatctcagtttgagatccattttctccaaaatcttcagaatgttgatctttttccctaatatttcgataacgctcctg |
8372141 |
T |
|
| Q |
202 |
catattttgattgagaacatttgt |
225 |
Q |
| |
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|||||||||||||| || |||||| |
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| T |
8372142 |
catattttgattgaaaatatttgt |
8372165 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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