View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16184_low_3 (Length: 404)
Name: NF16184_low_3
Description: NF16184
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16184_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 365; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 10 - 386
Target Start/End: Original strand, 21560306 - 21560682
Alignment:
| Q |
10 |
attattctcccaagaataagaatcacgaaatgatcgcaaccctaattcgctagtcacaatatgttaatcgaaatagcaatctagagaaagttttctcaca |
109 |
Q |
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| T |
21560306 |
attattctcccaagaataagaatcacgaaatgatcgcaaccctaattcgctagtcacaatatgttaatcgaaatagctatctagagaaagttttctcaca |
21560405 |
T |
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| Q |
110 |
tttgtgaatgccaagttgataacataggaaaggaattgtccaccagtgatgagaaatccattgagactaacaagtgctcctctaaccctagttggtgaag |
209 |
Q |
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| T |
21560406 |
tttgtgaatgccaagttgataacataggaaaggaattgtccaccagtgatgagaaatccattgagactaacaagtgctcctctaaccctagttggtgaag |
21560505 |
T |
|
| Q |
210 |
cttctgagatatataaaggagaagccattgaagccattccaacaccaaaaccaacaaagactctaccaacaatgagaatagctggattgattgcagcagc |
309 |
Q |
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| T |
21560506 |
cttctgagatatataaaggagaagccattgaagccattccaacaccaagaccaacaaagactctaccaacaatgagaatagctggatttattgcagcagc |
21560605 |
T |
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| Q |
310 |
cataataactgagccaatgaaaaagagtgcatctgcaagaattattgcttttttccttccaaatcgatcgttgatcc |
386 |
Q |
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| T |
21560606 |
cataataactgagccaatgaaaaagagtgcatctgcaagaattattgcttttttccttccaaatcgatcgttgatcc |
21560682 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 119 - 386
Target Start/End: Original strand, 21493241 - 21493508
Alignment:
| Q |
119 |
gccaagttgataacataggaaaggaattgtccaccagtgatgagaaatccattgagactaacaagtgctcctctaaccctagttggtgaagcttctgaga |
218 |
Q |
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| T |
21493241 |
gccaagttgatgagataggaaaggaactgtccaccagtgatgagaaaactgttgagactaacaagagcacctctaactcgagttggtgaagcctcagaga |
21493340 |
T |
|
| Q |
219 |
tatataaaggagaagccattgaagccattccaacaccaaaaccaacaaagactctaccaacaatgagaatagctggattgattgcagcagccataataac |
318 |
Q |
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| || |||||||| |||||||||||||| || ||||||| ||||||||| |||| ||||||||||||| |||||||||| |||||||||| |||| |
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| T |
21493341 |
tgtacaaaggagatgccattgaagccatcccgacaccaagaccaacaaatactcgaccaacaatgagagtagctggatttggagcagcagccaagataat |
21493440 |
T |
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| Q |
319 |
tgagccaatgaaaaagagtgcatctgcaagaattattgcttttttccttccaaatcgatcgttgatcc |
386 |
Q |
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| T |
21493441 |
tgaccctagtaaaaagagggtatctgcaacaattattgatacttttcttccaaacctatcattgatcc |
21493508 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 45; Significance: 2e-16; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 206 - 378
Target Start/End: Complemental strand, 33114927 - 33114755
Alignment:
| Q |
206 |
gaagcttctgagatatataaaggagaagccattgaagccattccaacaccaaaaccaacaaagactctaccaacaatgagaatagctggattgattgcag |
305 |
Q |
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||||||||||| || || | ||||||||||||||||||||||||||||||| || ||||| || | || || ||||||||||| || || |||||| |
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| T |
33114927 |
gaagcttctgaaatgtacagtggagaagccattgaagccattccaacaccaagtccgacaaaaacacggcccacgatgagaatagcagggctggttgcag |
33114828 |
T |
|
| Q |
306 |
cagccataataactgagccaatgaaaaagagtgcatctgcaagaattattgcttttttccttccaaatcgatc |
378 |
Q |
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| T |
33114827 |
cagccatgatagcagaccctataaaaaagagggtatctgcaatcataattgatcttttccttccgaatcgatc |
33114755 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 113 - 177
Target Start/End: Complemental strand, 33115447 - 33115383
Alignment:
| Q |
113 |
gtgaatgccaagttgataacataggaaaggaattgtccaccagtgatgagaaatccattgagact |
177 |
Q |
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||||| ||||||||||| | |||||| || |||||||| |||||||||||||| || |||||||| |
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| T |
33115447 |
gtgaaggccaagttgatgagataggagagaaattgtcccccagtgatgagaaaaccgttgagact |
33115383 |
T |
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