View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16184_low_4 (Length: 397)
Name: NF16184_low_4
Description: NF16184
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16184_low_4 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 397; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 397; E-Value: 0
Query Start/End: Original strand, 1 - 397
Target Start/End: Complemental strand, 44996226 - 44995830
Alignment:
| Q |
1 |
atgtgccaaaactaacaacatcgggtgtcaagcccttgcttttcatttccccaagcaaatcaacagcttcatttactttcttagaattgcaaaggctttc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44996226 |
atgtgccaaaactaacaacatcgggtgtcaagcccttgcttttcatttccccaagcaaatcaacagcttcatttactttcttagaattgcaaaggctttc |
44996127 |
T |
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| Q |
101 |
tatgatagtgttatatgtaattatgtttggagcacatcctttctccgtcatcgccttgaaaatctccattacttcttcggactttgcagttttgcacagt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44996126 |
tatgatagtgttatatgtaattatgtttggagcacatcctttctccgtcatcgccttgaaaatctccattacttcttcggactttgcagttttgcacagt |
44996027 |
T |
|
| Q |
201 |
ccattcaacaaagtgttatatgtgataacatcaggagtcataccttgactccacattctgtttaccaactcaattgcactgtctaacttcaactgtctgc |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44996026 |
ccattcaacaaagtgttatatgtgataacatcaggagtcataccttgactccacattctgtttaccaactcaattgcactgtctaacttcaactgtctgc |
44995927 |
T |
|
| Q |
301 |
aatagccgtcaaccaaagtgttgtatgtaaatatgtctgggatgcatcctttggttatagcatcaccaataagatgattagcatcagataaacaacc |
397 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44995926 |
aatagccgtcaaccaaagtgttgtatgtaaatatgtctgggatgcatcctttggttatagcatcaccaataagatgattagcatcagataaacaacc |
44995830 |
T |
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