View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16184_low_5 (Length: 366)
Name: NF16184_low_5
Description: NF16184
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16184_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 330; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 11 - 348
Target Start/End: Original strand, 42753966 - 42754303
Alignment:
| Q |
11 |
ggcactaagcaaaagaggaaatagaatattcacataccccactaaaattgccttctcagcttttaataaatcaaagaaatgcaaggtagcaagcactgaa |
110 |
Q |
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| T |
42753966 |
ggcactaagcaaaacaggaaatagaatattcacataccccactaaaattgccttctcagcttttaataaatcaaagaaatgcaaggtagcaagcactgaa |
42754065 |
T |
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| Q |
111 |
aatgccatggagtatgcatttagaggttttgtgtctccatttccagaagttaagtttaccctcgatgtcaatccaaatgctggcctatcaaaagctaaaa |
210 |
Q |
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| T |
42754066 |
aatgccatggagtatgcatttagaggttttgtgtctccatttccagaagttaagtttaccctcgatgtcaatccaaacgctggcctatcaaaagctaaaa |
42754165 |
T |
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| Q |
211 |
cttttgaacacgtagcctcagccaatggcttcataacttgtttccaagagaaaactgaggctccgaatccatgtaacagaatcataggcaaacacagctt |
310 |
Q |
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| T |
42754166 |
cttttgaacacgtagcctcagccaatggcttcataacttgtttccaagagaaaactgaggctccgaatccatgtaacagaatcataggcaaacacagctt |
42754265 |
T |
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| Q |
311 |
gttgatttgtgtttgggaattggattcagcatcatatt |
348 |
Q |
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| T |
42754266 |
gttgatttgtgtttgggaattggattcagcatcatatt |
42754303 |
T |
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