View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16184_low_6 (Length: 361)
Name: NF16184_low_6
Description: NF16184
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16184_low_6 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 270; Significance: 1e-151; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 16 - 346
Target Start/End: Complemental strand, 6145943 - 6145613
Alignment:
| Q |
16 |
tcaaaggatcggtgctggaatggttttttcagttttaacaatgatagtagcagctttggtagagnnnnnnnggcttaaagttgttgatatgaatccatca |
115 |
Q |
| |
|
||||||||| ||| ||||||||||||||| ||||||||||||||||||||||||||||| ||| |||||||||||||||| |||||||||||| |
|
|
| T |
6145943 |
tcaaaggattggtattggaatggttttttcggttttaacaatgatagtagcagctttggtcgagaaaaaaaggcttaaagttgttgagatgaatccatca |
6145844 |
T |
|
| Q |
116 |
catggttcactttcaatgagtgttttttggttagcgccgcagtttctaattatcggttttggcgacggtttggcgctcgttggtttacaagaatatttct |
215 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
6145843 |
catggttcactttcaatgagtgttttttggttagcgccgcagtttctaattatcggttttggcgacggtttggcgcttgttggtttacaagaatatttct |
6145744 |
T |
|
| Q |
216 |
atgaccaagttcccgattcaatgagaagtttgggaattggactttaccttagtgtgattggagctgcaaattttctaagtagtttgttgataacaattgt |
315 |
Q |
| |
|
|||| |||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6145743 |
atgatcaagttcctgattcaatgagaagcttgggaattggactttaccttagtgtgattggagctgcaaattttctaagtagtttgttgataacaattgt |
6145644 |
T |
|
| Q |
316 |
tgatcatgtgacaagtaaaagtggtaaaagt |
346 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
6145643 |
tgatcatgtgacaagtaaaagtggtaaaagt |
6145613 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 73; Significance: 3e-33; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 138 - 322
Target Start/End: Complemental strand, 23692644 - 23692460
Alignment:
| Q |
138 |
ttttttggttagcgccgcagtttctaattatcggttttggcgacggtttggcgctcgttggtttacaagaatatttctatgaccaagttcccgattcaat |
237 |
Q |
| |
|
|||||||||| || || || ||||||||||| |||||||| || || || | || || || ||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
23692644 |
ttttttggttggctccacaatttctaattattggttttggtgatggatttacccttgtgggattacaagaatatttctatgaccaagttcctgattcaat |
23692545 |
T |
|
| Q |
238 |
gagaagtttgggaattggactttaccttagtgtgattggagctgcaaattttctaagtagtttgttgataacaattgttgatcat |
322 |
Q |
| |
|
|||||| || || || | |||| | |||||||||||||||||||||||| | |||||| ||||||||||||||||||||||| |
|
|
| T |
23692544 |
gagaagcttaggtatagctttttatttaagtgtgattggagctgcaaattttattagtagtgtgttgataacaattgttgatcat |
23692460 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 47; Significance: 9e-18; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 194 - 328
Target Start/End: Complemental strand, 31074931 - 31074797
Alignment:
| Q |
194 |
gttggtttacaagaatatttctatgaccaagttcccgattcaatgagaagtttgggaattggactttaccttagtgtgattggagctgcaaattttctaa |
293 |
Q |
| |
|
|||||||||||||| |||||||||| ||||||||| || ||||||| ||||||||||| | | | || |||||||||||||||| || || ||| ||| |
|
|
| T |
31074931 |
gttggtttacaagagtatttctatggccaagttcctgactcaatgaagagtttgggaatggcattatatcttagtgtgattggagttggaagtttcttaa |
31074832 |
T |
|
| Q |
294 |
gtagtttgttgataacaattgttgatcatgtgaca |
328 |
Q |
| |
|
||||||| || || || ||||| ||||| |||||| |
|
|
| T |
31074831 |
gtagttttttaatcactattgtggatcaagtgaca |
31074797 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 194 - 278
Target Start/End: Complemental strand, 31063521 - 31063437
Alignment:
| Q |
194 |
gttggtttacaagaatatttctatgaccaagttcccgattcaatgagaagtttgggaattggactttaccttagtgtgattggag |
278 |
Q |
| |
|
|||||||||||||| |||||||| ||||||||||| || ||||||||||| || ||||| | | | || |||||||||||||||| |
|
|
| T |
31063521 |
gttggtttacaagagtatttctacgaccaagttcctgactcaatgagaagcttaggaatggcattatatcttagtgtgattggag |
31063437 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 194 - 250
Target Start/End: Complemental strand, 31057439 - 31057383
Alignment:
| Q |
194 |
gttggtttacaagaatatttctatgaccaagttcccgattcaatgagaagtttggga |
250 |
Q |
| |
|
|||||| ||||||| |||||||| ||| ||||||| |||||||||||||| |||||| |
|
|
| T |
31057439 |
gttggtatacaagagtatttctacgacgaagttcctgattcaatgagaagcttggga |
31057383 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University