View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16184_low_7 (Length: 310)
Name: NF16184_low_7
Description: NF16184
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16184_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 280; Significance: 1e-157; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 1 - 291
Target Start/End: Complemental strand, 49271523 - 49271232
Alignment:
| Q |
1 |
caaagttacactaatcataggcaaagctagaaaaccaacatcttctacctcttgaacaaacacaccccatgatatgcctgaaccatcctctccctcttt- |
99 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49271523 |
caaagttacactaatcataggcaaagctagaaaaccaacatcttctacctcttgaacaaacacaccccatgatatgcctgaaccatcctctccctctttt |
49271424 |
T |
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| Q |
100 |
gtctttctttgacaaacctttttccatatcttccagcactatggtttaaacaagtgctgaaaatgaaaactgatagaaaagcacaggtttgatacggttt |
199 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49271423 |
gtctttctttgacaaacctttttccatatcttccagcactatggtttaaacaagtgctgaaaatgaaaactgatagaaaagcacaggtttgatacggttt |
49271324 |
T |
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| Q |
200 |
tgccttttgttgtgggtaaatatttgaatatgtagcacttgagattattaaaaatcaaataaacaataatcacatgttaattgtgatgtacc |
291 |
Q |
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| T |
49271323 |
tgccttttgttgtgggtaaatatttgaatatgtagaacttgagattattaaaaatcaaataaacaataatcacatgttaattgtgatgtacc |
49271232 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 1 - 128
Target Start/End: Complemental strand, 49254855 - 49254728
Alignment:
| Q |
1 |
caaagttacactaatcataggcaaagctagaaaaccaacatcttctacctcttgaacaaacacaccccatgatatg---cctgaaccatcctctccctct |
97 |
Q |
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|||||||||||||||||||||||| |||||||||| |||||||| |||||||||| ||| |||||||||| |||| | ||||||| | |||||| |
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| T |
49254855 |
caaagttacactaatcataggcaatgctagaaaacaaacatctttcacctcttgaaaaaatacaccccatgttatgcttcttgaacca---gcaccctct |
49254759 |
T |
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| Q |
98 |
ttgtctttctttgacaaacctttttccatat |
128 |
Q |
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||||||||| | |||||||||||||||||| |
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| T |
49254758 |
ctgtctttctctaacaaacctttttccatat |
49254728 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 49274721 - 49274761
Alignment:
| Q |
1 |
caaagttacactaatcataggcaaagctagaaaaccaacat |
41 |
Q |
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||||||||||||| ||||||||||||||||||||||||||| |
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| T |
49274721 |
caaagttacactagtcataggcaaagctagaaaaccaacat |
49274761 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 14 - 77
Target Start/End: Complemental strand, 49267104 - 49267041
Alignment:
| Q |
14 |
atcataggcaaagctagaaaaccaacatcttctacctcttgaacaaacacaccccatgatatgc |
77 |
Q |
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|||||||||| ||||||||||| |||||||| |||||||||| ||| |||||||||| ||||| |
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| T |
49267104 |
atcataggcagagctagaaaacaaacatctttcacctcttgaaaaaatacaccccatgttatgc |
49267041 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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