View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16185_high_1 (Length: 462)
Name: NF16185_high_1
Description: NF16185
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16185_high_1 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 387; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 387; E-Value: 0
Query Start/End: Original strand, 18 - 454
Target Start/End: Complemental strand, 29838874 - 29838442
Alignment:
| Q |
18 |
taaacaatacaaaaatgggacaatccagatatgtacaaacctgagttctgcaggtagctgtggaagaacatgtttgactgcgcaatccagatatccagaa |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29838874 |
taaacaatacaaaaatgggacaatccagatatgtacaaacctgagttctgcaggtagctgtggaagaacatgtttgactgcgcaatccagatatccagaa |
29838775 |
T |
|
| Q |
118 |
gcctttaagaagatatcaatagaagttcgtctgctttctatcagtcgataccaaaagattaaatttcacattatcggattgtggcaaaatggaacnnnnn |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29838774 |
gcctttaagaagatatcaatagaagttcgtctgctttctattagtcgataccaaaagattaaatttcacattatcggattgtggcaaaatggaacaaaaa |
29838675 |
T |
|
| Q |
218 |
nnnnngaaagaatatattaactacttttcagtttaatttgcctattgcgacaaattagcaattactagtcattaaatgtacatgcacgcatgcacgatca |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29838674 |
aa----aaagaatatattaactacttttcagtttaatttgcctattgcgacaaattagcaattactagtcattaaatgtacatgcacgcatgcacgatca |
29838579 |
T |
|
| Q |
318 |
cagaagcacacagaagaaacaagatcatttgataatgtcaagttattacgcggttgtcaccatttatacacgatttgcaagcatttaccaatcattttgt |
417 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||| |
|
|
| T |
29838578 |
cagaagcacacagaagaaacaagatcatttgataatgtcaagttattacgcggttgtcaccatttatacgcgatttgcaagcatttaccaatctttttgt |
29838479 |
T |
|
| Q |
418 |
agtattacttggtacataccatctgatactctctgct |
454 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29838478 |
agtattacttggtacataccatctgatactctctgct |
29838442 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 55 - 136
Target Start/End: Original strand, 34627445 - 34627526
Alignment:
| Q |
55 |
aacctgagttctgcaggtagctgtggaagaacatgtttgactgcgcaatccagatatccagaagcctttaagaagatatcaa |
136 |
Q |
| |
|
|||||||| || ||||| | ||||||||||||||| |||| || || || ||||| ||| |||||||||||||||||||| |
|
|
| T |
34627445 |
aacctgagctcagcaggcaactgtggaagaacatgcctgacagcacagtcaagatacccaccagcctttaagaagatatcaa |
34627526 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University