View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16185_high_2 (Length: 444)
Name: NF16185_high_2
Description: NF16185
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16185_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 226; Significance: 1e-124; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 123 - 404
Target Start/End: Complemental strand, 35193141 - 35192860
Alignment:
| Q |
123 |
ttaattgtttgaagagtgagatggaatttgatggacaagaagaggatatggagattccagaaacacaaacaccagtgccaacaagttaagactcacttgc |
222 |
Q |
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| T |
35193141 |
ttaattgtttgaagagtgagatggaatttgatgaacaagaagaggatatggagattccagaaacacaaacaccagtgccaacaagttatgactcacttgc |
35193042 |
T |
|
| Q |
223 |
taactcggcttcaccttcaaaactcaccgtcggagttgacagaaggaaaggtaacgacaacggcagttttgtttcaacggtgaggtaccgagaatatcag |
322 |
Q |
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|||||||||||||| ||||||||| ||||||| ||||||| || | |||||||||| |||| | |||||||||||||||||||||||||||||||||| |
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| T |
35193041 |
taactcggcttcacgttcaaaacttaccgtcgaagttgacggatgaaaaggtaacggcaacaacggttttgtttcaacggtgaggtaccgagaatatcat |
35192942 |
T |
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| Q |
323 |
acgccgtcaagaagctgttatttgcgccgcttgtaactgtcaccaaaacttccaccgcaaagagatcgatggtgaatctgtt |
404 |
Q |
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| T |
35192941 |
acgccgtcaagaagctgttatttgcgccgcttgtaactgtcaccagaacttccaccgcaaagagatcgatggtgaatctgtt |
35192860 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 222; Significance: 1e-122; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 124 - 405
Target Start/End: Complemental strand, 44748201 - 44747920
Alignment:
| Q |
124 |
taattgtttgaagagtgagatggaatttgatggacaagaagaggatatggagattccagaaacacaaacaccagtgccaacaagttaagactcacttgct |
223 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||| ||||||||||||| ||||||| |||||||||||||||||||||| |||||||||||| |
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| T |
44748201 |
taattgtttgaagagtgagatggaatttgatgaacaagaagatgatatggagattctagaaacataaacaccagtgccaacaagttatgactcacttgct |
44748102 |
T |
|
| Q |
224 |
aactcggcttcaccttcaaaactcaccgtcggagttgacagaaggaaaggtaacgacaacggcagttttgtttcaacggtgaggtaccgagaatatcaga |
323 |
Q |
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| T |
44748101 |
aactcggcttcacgttcaaaactcaccgtcggagttgacggaaggaaaggtaatggcaacgacggttttgtttcaacgatgaggtaccgagaatatcaga |
44748002 |
T |
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| Q |
324 |
cgccgtcaagaagctgttatttgcgccgcttgtaactgtcaccaaaacttccaccgcaaagagatcgatggtgaatctgtta |
405 |
Q |
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| T |
44748001 |
cgccatcaagaagctgttatttgcgccgcttgtaactgtcaccagaacttccactgcaaagagatcgatggtgaatctgtta |
44747920 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 157 - 323
Target Start/End: Original strand, 26145840 - 26146006
Alignment:
| Q |
157 |
acaagaagaggatatggagattccagaaacacaaacaccagtgccaacaagttaagactcacttgctaactcggcttcaccttcaaaactcaccgtcgga |
256 |
Q |
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|||||||||||| |||||||||||| |||||||||||||||||||||| ||||| || | ||||| ||| || ||||||| ||||||||||||||||| | |
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| T |
26145840 |
acaagaagaggagatggagattccaaaaacacaaacaccagtgccaacgagttatgattgacttggtaattcagcttcacgttcaaaactcaccgtcgta |
26145939 |
T |
|
| Q |
257 |
gttgacagaaggaaaggtaacgacaacggcagttttgtttcaacggtgaggtaccgagaatatcaga |
323 |
Q |
| |
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|||||| ||||||||||||| | ||||||| |||||||||| ||| ||||||||| ||||| ||||| |
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| T |
26145940 |
gttgacggaaggaaaggtaatggcaacggcggttttgtttcgacgatgaggtacctagaatgtcaga |
26146006 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 55 - 90
Target Start/End: Complemental strand, 44748268 - 44748233
Alignment:
| Q |
55 |
ttgttaatctgttctaaagctacaacacttaaccat |
90 |
Q |
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| T |
44748268 |
ttgttaatctgttctaaagctacaacacttaaccat |
44748233 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 9 - 38
Target Start/End: Complemental strand, 44748313 - 44748284
Alignment:
| Q |
9 |
acatcatcaaaacccaataaattaacaaat |
38 |
Q |
| |
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| T |
44748313 |
acatcatcaaaacccaataaattaacaaat |
44748284 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 100; Significance: 3e-49; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 123 - 323
Target Start/End: Original strand, 27507912 - 27508118
Alignment:
| Q |
123 |
ttaattgtttgaagagtgagatggaatttgatggacaa---------gaagaggatatggagattccagaaacacaaacaccagtgccaacaagttaaga |
213 |
Q |
| |
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||||||||||||||||||| ||||||||||||| |||| |||||||| |||||||||||||||| |||||||||||||||||| ||||| || |
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| T |
27507912 |
ttaattgtttgaagagtgaaatggaatttgatgaacaagaggaacaagaagaggagatggagattccagaaatacaaacaccagtgccaacgagttatga |
27508011 |
T |
|
| Q |
214 |
ctcacttgctaactcggcttcaccttcaaaactcaccgtcggagttgacagaaggaaaggtaacgacaacggcagttttgtttcaacggtgaggtaccga |
313 |
Q |
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||||||| |||||| ||||||| ||||||||||||||| ||||||||| ||||||||||||||| ||||||| |||||| || |||||||||||||| |
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| T |
27508012 |
ctcacttagtaactcagcttcacgttcaaaactcaccgttggagttgacggaaggaaaggtaacggcaacggcggttttgctt---cggtgaggtaccga |
27508108 |
T |
|
| Q |
314 |
gaatatcaga |
323 |
Q |
| |
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|||| ||||| |
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| T |
27508109 |
gaatgtcaga |
27508118 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 333 - 398
Target Start/End: Original strand, 27508199 - 27508264
Alignment:
| Q |
333 |
gaagctgttatttgcgccgcttgtaactgtcaccaaaacttccaccgcaaagagatcgatggtgaa |
398 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
27508199 |
gaagctgttatttgcgccgcttgtaactgtcaccggaacttccaccgcaaagagatcgatggtgaa |
27508264 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 95; Significance: 3e-46; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 157 - 323
Target Start/End: Original strand, 137320 - 137486
Alignment:
| Q |
157 |
acaagaagaggatatggagattccagaaacacaaacaccagtgccaacaagttaagactcacttgctaactcggcttcaccttcaaaactcaccgtcgga |
256 |
Q |
| |
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|||||||||||| |||||||||||| |||||||||||||||||||||| ||||| |||| ||||| ||| || ||||| ||||||||||||||||| | |
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| T |
137320 |
acaagaagaggagatggagattccaaaaacacaaacaccagtgccaacgagttatgactgacttggtaattcaacttcaagttcaaaactcaccgtcgta |
137419 |
T |
|
| Q |
257 |
gttgacagaaggaaaggtaacgacaacggcagttttgtttcaacggtgaggtaccgagaatatcaga |
323 |
Q |
| |
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|||||||||||||||||||| | ||||||| |||||||||| ||| ||||||||||||||| ||||| |
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| T |
137420 |
gttgacagaaggaaaggtaatggcaacggcggttttgtttcgacgatgaggtaccgagaatgtcaga |
137486 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 157 - 323
Target Start/End: Original strand, 30232153 - 30232319
Alignment:
| Q |
157 |
acaagaagaggatatggagattccagaaacacaaacaccagtgccaacaagttaagactcacttgctaactcggcttcaccttcaaaactcaccgtcgga |
256 |
Q |
| |
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|||||||||||| |||||||||||| |||||||||||||||||||||| ||||| |||| ||||| ||| || ||||||| ||||||||||||||||| | |
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| T |
30232153 |
acaagaagaggagatggagattccaaaaacacaaacaccagtgccaacgagttatgactgacttggtaattcagcttcacattcaaaactcaccgtcgta |
30232252 |
T |
|
| Q |
257 |
gttgacagaaggaaaggtaacgacaacggcagttttgtttcaacggtgaggtaccgagaatatcaga |
323 |
Q |
| |
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|||||| ||||||||||||| | ||||||| ||||||||| ||| ||||||||||||||| ||||| |
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| T |
30232253 |
gttgacggaaggaaaggtaatggcaacggcggttttgttttgacgatgaggtaccgagaatgtcaga |
30232319 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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