View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16185_high_3 (Length: 348)
Name: NF16185_high_3
Description: NF16185
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16185_high_3 |
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Alignment Details
Target: chr8 (Bit Score: 317; Significance: 1e-179; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 1 - 333
Target Start/End: Original strand, 30034219 - 30034551
Alignment:
| Q |
1 |
ctacctattcatgcctttcagtctcataggaaatccagtgtgcagcactggtctctcaaatacaaattactgcaaccttcagcaacagcctaaacaaccc |
100 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30034219 |
ctacctattcatgcttttcagtctcataggaaatccagtgtgcagcactggtctctcaaatacaaattactgcaaccttcagcaacagcctaaacaaccc |
30034318 |
T |
|
| Q |
101 |
tattcaactagctttgcaaattgtggaggaatatcatgcccccctgataaaaaactcagtccacaaagctgtgaatgtgcctatccatatcaaggaatgt |
200 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30034319 |
tattcaactagcttggcaaattgtggaggaatatcatgcccccctgataaaaaactcagtccacaaagctgtgaatgtgcctatccatatcaaggaatgt |
30034418 |
T |
|
| Q |
201 |
tctacttcagaggacctttgttcagagaattgtcgaatatcactattttccattcgcttgaaatgagtttatgggtgaagttaggtttaacacctggctc |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30034419 |
tctacttcagaggacctttgttcagagaattgtcgaatataactattttccattcgcttgaaatgagtttatgggtgaagttaggtttaacacctggctc |
30034518 |
T |
|
| Q |
301 |
agtttctttacaaaacccatttttcaacggtga |
333 |
Q |
| |
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|||||||||||||||||| |||||||||||||| |
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| T |
30034519 |
agtttctttacaaaacccttttttcaacggtga |
30034551 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 5 - 337
Target Start/End: Original strand, 30050227 - 30050562
Alignment:
| Q |
5 |
ctattcatgcctttcagtctcataggaaatccagtgtgcagcactggtctctcaaatacaaattactgcaaccttcagcaacagcctaaacaaccctatt |
104 |
Q |
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||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||| |||||||||||||||||| |||||||| |||||| ||||||| |
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| T |
30050227 |
ctattcatgcctttcagtctcattggaaatccagtgtgcagtactggtctctcaaatgcaaattactgcaaccttcggcaacagcttaaacagccctatt |
30050326 |
T |
|
| Q |
105 |
caactagctttgcaaattgtggaggaatat---catgcccccctgataaaaaactcagtccacaaagctgtgaatgtgcctatccatatcaaggaatgtt |
201 |
Q |
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| | |||||| || |||||||||||||||| |||| |||| ||| |||| |||||||||||||| |||| ||||||||||||||||||||||||||| |
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| T |
30050327 |
ccattagcttggctaattgtggaggaatattatcatgtcccctggatcaaaagctcagtccacaaagttgtgcatgtgcctatccatatcaaggaatgtt |
30050426 |
T |
|
| Q |
202 |
ctacttcagaggacctttgttcagagaattgtcgaatatcactattttccattcgcttgaaatgagtttatgggtgaagttaggtttaacacctggctca |
301 |
Q |
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||| | |||||||||||||| ||||||||||| ||||| |||||||||||||| ||||||| ||| ||||||| ||| || |||||||||||||| ||| |
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| T |
30050427 |
gtacgttagaggacctttgtttagagaattgtctaatataactattttccattcacttgaaaagagcttatgggagaaattgggtttaacacctggttca |
30050526 |
T |
|
| Q |
302 |
gtttctttacaaaacccatttttcaacggtgatgat |
337 |
Q |
| |
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||||||||||||||||| |||||||| ||||||||| |
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| T |
30050527 |
gtttctttacaaaacccttttttcaatggtgatgat |
30050562 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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