View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16185_high_5 (Length: 321)
Name: NF16185_high_5
Description: NF16185
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16185_high_5 |
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Alignment Details
Target: chr5 (Bit Score: 296; Significance: 1e-166; HSPs: 8)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 1 - 300
Target Start/End: Complemental strand, 11887289 - 11886990
Alignment:
| Q |
1 |
gcagtagaatgacaggaacaagcattgcagcgagtggaatagttcttgaaccactgaccaaagacaactacgaaaactggagctgtctggttagaaacta |
100 |
Q |
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| T |
11887289 |
gcagtagaatgacaggaacaagcattgcagcgagtggaatagttcttgaaccactgaccaaagacaactacgaaaactggagctgtctggttagaaacta |
11887190 |
T |
|
| Q |
101 |
tcttgtgggacatggtctgtggggtgttgtgacctctattcctgaaattggtgcgcgttctaagaccgaatatgagatttggaacaggaagaatgggaag |
200 |
Q |
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| T |
11887189 |
tcttgtgggacatggtctgtggggtgttgtgacctctattcctgaaattggtgcgcgttctaagatcgaatatgagatttggaacaggaagaatgggaag |
11887090 |
T |
|
| Q |
201 |
gctttgcatatcattcaactaacatgtggaccagagaatcttactcatattagagatcttcatattgctaaagaagcctggaataaattgggtgcaactt |
300 |
Q |
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| T |
11887089 |
gctttgcatatcattcaactaacatgtggaccagagaatcttactcatattagagatcttcatattgctaaagaagcctggaataaattgggtgcaactt |
11886990 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 19 - 284
Target Start/End: Complemental strand, 11816676 - 11816411
Alignment:
| Q |
19 |
caagcattgcagcgagtggaatagttcttgaaccactgaccaaagacaactacgaaaactggagctgtctggttagaaactatcttgtgggacatggtct |
118 |
Q |
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||||||||||||| ||||||||||||||||||||||| || |||||||||||||| || ||||||||| |||| ||||||||||||| || |||| ||| |
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| T |
11816676 |
caagcattgcagcaagtggaatagttcttgaaccactaacaaaagacaactacgataattggagctgtttggtgagaaactatcttgcagggcatgatct |
11816577 |
T |
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| Q |
119 |
gtggggtgttgtgacctctattcctgaaattggtgcgcgttctaagaccgaatatgagatttggaacaggaagaatgggaaggctttgcatatcattcaa |
218 |
Q |
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| T |
11816576 |
gtggggagttgtgagttctgtttctacaataggtgtgggatctaaagaagaagttgaagcatggaatagggataatgctaaggctttgcatattattcaa |
11816477 |
T |
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| Q |
219 |
ctaacatgtggaccagagaatcttactcatattagagatcttcatattgctaaagaagcctggaat |
284 |
Q |
| |
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||| |||||||| ||||||||||| | |||||||||||| |||||| ||||||||| || |||||| |
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| T |
11816476 |
ctagcatgtggatcagagaatcttgcacatattagagattttcatactgctaaagatgcttggaat |
11816411 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 19 - 284
Target Start/End: Complemental strand, 11841988 - 11841723
Alignment:
| Q |
19 |
caagcattgcagcgagtggaatagttcttgaaccactgaccaaagacaactacgaaaactggagctgtctggttagaaactatcttgtgggacatggtct |
118 |
Q |
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| T |
11841988 |
caagcatttcagcaaatgcaatagttcttgaaccactaacaaaagacaactacgataactggagctgtttggtgagaaactatcttgaggggcatgatct |
11841889 |
T |
|
| Q |
119 |
gtggggtgttgtgacctctattcctgaaattggtgcgcgttctaagaccgaatatgagatttggaacaggaagaatgggaaggctttgcatatcattcaa |
218 |
Q |
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| T |
11841888 |
gtggggagttgtgacttctgtttctaaaatgggtgtgggatctaaagaagaggtggaagcatggaacaaggtcaatgctaaggttttgcatattattcaa |
11841789 |
T |
|
| Q |
219 |
ctaacatgtggaccagagaatcttactcatattagagatcttcatattgctaaagaagcctggaat |
284 |
Q |
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||| |||| ||| ||||||||||||| |||||||||||| || ||| |||||| ||||| |||||| |
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| T |
11841788 |
ctagcatgcggatcagagaatcttacgcatattagagattttgatagtgctaaggaagcttggaat |
11841723 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 22 - 130
Target Start/End: Complemental strand, 11776681 - 11776573
Alignment:
| Q |
22 |
gcattgcagcgagtggaatagttcttgaaccactgaccaaagacaactacgaaaactggagctgtctggttagaaactatcttgtgggacatggtctgtg |
121 |
Q |
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|||||||||| ||||||||||||||||||||||| || | |||||||||||| |||||||||||| |||| | ||||||||||||||| |||| |||||| |
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| T |
11776681 |
gcattgcagctagtggaatagttcttgaaccactaacaagagacaactacgataactggagctgtttggtgaaaaactatcttgtggggcatgatctgtg |
11776582 |
T |
|
| Q |
122 |
gggtgttgt |
130 |
Q |
| |
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||| ||||| |
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| T |
11776581 |
gggcgttgt |
11776573 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 38 - 262
Target Start/End: Original strand, 11739970 - 11740197
Alignment:
| Q |
38 |
aatagttcttgaaccactgaccaaagacaactacgaaaactggagctgtctggttagaaactatcttgtgggacatggtctgtggggtgttgtgacctct |
137 |
Q |
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||||||| ||||||||||||| ||||||||||| || |||||||||||||||| ||||| ||||| | || || | ||||||||| ||||||| ||| |
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| T |
11739970 |
aatagtttttgaaccactgacgaaagacaactatgattactggagctgtctggtgagaaattatctattagggcaagatctgtgggggtttgtgacttct |
11740069 |
T |
|
| Q |
138 |
attcctgaaat---tggtgcgcgttctaagacc-gaatatgagatttggaacaggaagaatgggaaggctttgcatatcattcaactaacatgtggacca |
233 |
Q |
| |
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||| |||| | |||| | || |||| ||| ||| |||| | |||||||||| ||||||||| ||||||||||||||||||||| ||||||||||| |
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| T |
11740070 |
atttctgagagcactggtccacgatcta-gacgagaaactgaggtctggaacaggaggaatgggaaagctttgcatatcattcaactagcatgtggacca |
11740168 |
T |
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| Q |
234 |
gagaatcttactcatattagagatcttca |
262 |
Q |
| |
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|||||| ||| || ||||| |||||||| |
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| T |
11740169 |
gagaatattaatcttattaaggatcttca |
11740197 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 175 - 252
Target Start/End: Complemental strand, 11776537 - 11776460
Alignment:
| Q |
175 |
agatttggaacaggaagaatgggaaggctttgcatatcattcaactaacatgtggaccagagaatcttactcatatta |
252 |
Q |
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|||| ||||| | |||||||||||||||||||||||| ||||||||| |||| ||| | ||||||||| | ||||||| |
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| T |
11776537 |
agatatggaagatgaagaatgggaaggctttgcatattattcaactagcatgcggatctgagaatcttgcacatatta |
11776460 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 201 - 237
Target Start/End: Complemental strand, 11929698 - 11929662
Alignment:
| Q |
201 |
gctttgcatatcattcaactaacatgtggaccagaga |
237 |
Q |
| |
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||||||||||||||||||||| ||||||||| ||||| |
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| T |
11929698 |
gctttgcatatcattcaactagcatgtggacgagaga |
11929662 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 201 - 237
Target Start/End: Complemental strand, 12014135 - 12014099
Alignment:
| Q |
201 |
gctttgcatatcattcaactaacatgtggaccagaga |
237 |
Q |
| |
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||||||||||||||||||||| ||||||||| ||||| |
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| T |
12014135 |
gctttgcatatcattcaactatcatgtggacgagaga |
12014099 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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