View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16185_low_1 (Length: 672)
Name: NF16185_low_1
Description: NF16185
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16185_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 572; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 572; E-Value: 0
Query Start/End: Original strand, 12 - 655
Target Start/End: Complemental strand, 36331198 - 36330546
Alignment:
| Q |
12 |
aagaaacgaaaacagatgaacggcaccaacctccgaagtaaaaagtcgaaaaccaatcctcgtttgccttcatctttgaacaaacagattcaaaccaatg |
111 |
Q |
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| T |
36331198 |
aagaaacgaaaacagatgaacgacaccaacctccgaagtaaaaagtcgaaaaccaatcctcgttcgccttcatctttgaacaaacagattcaaaccaatg |
36331099 |
T |
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| Q |
112 |
tccatttcgatgaagccaccactgatgtt---tatgaatacgaggaacaagatgcagaggaagagtctatgaagaataagcgctacgaccctgtttccgt |
208 |
Q |
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| T |
36331098 |
tccatttcgatgaagccaccactgatgttgtttatgaatacgaggaacaagatgcagaggaagagtctatgaagaataagcgctacgaccctgtttccgt |
36330999 |
T |
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| Q |
209 |
aaaggatcgcattccttgtcatttcaaggtagcttttccttttaacgctctgtttggatagaaatagtttcgttaagtaattatcattaatcgatcatat |
308 |
Q |
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| T |
36330998 |
aaaggatcgcattccttctcatttcaaggtagcttttccttttaacgctctgtttggatagaaatagtttccttaagtaattatcattaatcgatcatat |
36330899 |
T |
|
| Q |
309 |
gtataaactacgataaagtcaaataagccaatataattattcatgtttcagtcaactcatccc------atctaattctattgttaggattagaatgtac |
402 |
Q |
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| T |
36330898 |
gtataaactacgataaagtcaaataagccaatataattcttcatgtttcaggcaactcatcccttctatttctatttctatttttaggatgagaatgtac |
36330799 |
T |
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| Q |
403 |
aatctgataatgagttcgagaatgacgatgattgttacattggaacaaagagggatgcaaatgctgagggaagacatgtgaggatgatacaaggaattac |
502 |
Q |
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| T |
36330798 |
aatctgataatgagttcgagaatgacgatgattgttacattggaacaaagagggatgcaaatgctgagggaagacatgtgaggatgatagaaggaattac |
36330699 |
T |
|
| Q |
503 |
tggtatgcctactgagacttttcaaggtaatgcagagaataagaagttgatgatgagtgatgcttttgatcctagttgcgaggttgttgtgtgtggtgat |
602 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36330698 |
tggtatgcctactgagacttttcaaggtaatgcagagaataagaagttgatgatgagtgatgcttttgatcctagttgcgaggttgttgtgtgtggtgat |
36330599 |
T |
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| Q |
603 |
ggactcattaccatagaggatcttcttaatccaaattttgttgatcacaataa |
655 |
Q |
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| T |
36330598 |
ggactcattaccatagaggatcttcttaatccaaattttgttgatcacaataa |
36330546 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 68 - 104
Target Start/End: Complemental strand, 44371862 - 44371826
Alignment:
| Q |
68 |
tcctcgtttgccttcatctttgaacaaacagattcaa |
104 |
Q |
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| T |
44371862 |
tcctcgtttgccttcatctttgaaaaaagagattcaa |
44371826 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 68 - 104
Target Start/End: Complemental strand, 44380717 - 44380681
Alignment:
| Q |
68 |
tcctcgtttgccttcatctttgaacaaacagattcaa |
104 |
Q |
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|||||||||||||||||||||||| ||| |||||||| |
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| T |
44380717 |
tcctcgtttgccttcatctttgaaaaaagagattcaa |
44380681 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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