View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16185_low_5 (Length: 325)
Name: NF16185_low_5
Description: NF16185
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16185_low_5 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 244; Significance: 1e-135; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 66 - 325
Target Start/End: Complemental strand, 30034041 - 30033782
Alignment:
| Q |
66 |
ctggttggcttgacttcttcttttatggagaagaataataagaaatgagtcaggtcaaacggaaccggagtatatcagattagaaaacaataaatgtctc |
165 |
Q |
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| T |
30034041 |
ctggttggcttgacttcttcttttatggagaaaaataataagaaatgagtcaggtcaaacggaaccggaatatatcagattagaaaacaataaatgtctc |
30033942 |
T |
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| Q |
166 |
acatcaatgtatttttgtattgtgaactgagtgttactgttgaaatctggttgtcttgtaaatccacaagctgcaattggggacaaatgctgtcacccat |
265 |
Q |
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| T |
30033941 |
acatcaatgtatttttgtattctgaactgagtgttactgttgaaatctggttgtcttgtaaatccacaagctgcaattggggacaaatgctgtcacccat |
30033842 |
T |
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| Q |
266 |
gtctagtctattgttcaatgcattgtgtcttagtttcctgagaagaatgaaagttatggt |
325 |
Q |
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| T |
30033841 |
gtctagtgtattgttcaatgcattgtgtcttagtttcctgagaagaatgaaagttatggt |
30033782 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 143 - 306
Target Start/End: Complemental strand, 30050157 - 30049994
Alignment:
| Q |
143 |
gattagaaaacaataaatgtctcacatcaatgtatttttgtattgtgaactgagtgttactgttgaaatctggttgtcttgtaaatccacaagctgcaat |
242 |
Q |
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| T |
30050157 |
gattagaacgcaaaaaaggtctcacatcaatgtatttttgtaatgttccccgattatgactgttgaaatcctattctcttgtaaatccacaagcttcaac |
30050058 |
T |
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| Q |
243 |
tggggacaaatgctgtcacccatgtctagtctattgttcaatgcattgtgtcttagtttcctga |
306 |
Q |
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| T |
30050057 |
cggggataaatgctgtcatccatgtttagtgttttgttcagtgcattgcttcttagtttcctga |
30049994 |
T |
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