View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16186_high_1_N (Length: 439)
Name: NF16186_high_1_N
Description: NF16186
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16186_high_1_N |
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Alignment Details
Target: chr7 (Bit Score: 364; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 31 - 425
Target Start/End: Original strand, 19085533 - 19085928
Alignment:
| Q |
31 |
ataaataccttcatgttgttcatgatgtatcatttaagaaaactttcagattacaacgtgctgaaaagatacctcattatacaacatggttacacttgat |
130 |
Q |
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| T |
19085533 |
ataaataccttcatgttgttcatgatgtatcatttaagaaaactttcagattacaacgtgttgaaaagatacctcattatacaacatggttacacttgat |
19085632 |
T |
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| Q |
131 |
taggtaagtcttactttcaaatacacgtttattcttttatt----ccactttcaagtatacatttaaaaatgctaaatatattgatcaatgcatgtgtca |
226 |
Q |
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| T |
19085633 |
taggtaagtcttactttcaaatacacgtttattcttttattaattccactttcaagtatacatttaa---tgctaaatatattgatcaatgcatgtgtca |
19085729 |
T |
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| Q |
227 |
ttttttgtgttgctttattaaaatctttcacacaaaacagaaatgagagaatgacgaaagctgatgccttttctgcaagacgaaacatatattacgatca |
326 |
Q |
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| T |
19085730 |
ttttttgtgttgctttattaaaatctttcacacaaaacagaaatgagagaatgacgaaagctgatgccttttctgcaagacgaaacatatattacgatca |
19085829 |
T |
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| Q |
327 |
acatgcaggtgaaacaatgatatgcagtgataccgatgaagaggtccaagagaacaaagaagttaaacgtgacttttcttatggtgaagataaacttct |
425 |
Q |
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| T |
19085830 |
acatgcaggtgaaacaatgatatgcagtgataccgatgaagaggtccaagagaacaaagaagttaaacgtgacttttcttatggtgaagataaacttct |
19085928 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 50; Significance: 2e-19; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 62 - 151
Target Start/End: Complemental strand, 13356522 - 13356433
Alignment:
| Q |
62 |
atttaagaaaactttcagattacaacgtgctgaaaagatacctcattatacaacatggttacacttgattaggtaagtcttactttcaaa |
151 |
Q |
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| T |
13356522 |
atttaagaaaagtatcaaattacaacgtgttgaaaagatacctccttatacatcctggttacatttgtttaggtaagtctaactttcaaa |
13356433 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 236 - 416
Target Start/End: Complemental strand, 13356315 - 13356125
Alignment:
| Q |
236 |
ttgctttattaaaatctttcacacaaaacagaaatgagagaatgacgaaagctgatgccttttctgcaagacgaaacatatattacgatcaacatgcagg |
335 |
Q |
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| T |
13356315 |
ttgctttattaaaatatttcatatataacagaaataagagaatggccaaagttgatgcactttctgcaagatgaaacatatactatgatcaacatggagg |
13356216 |
T |
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| Q |
336 |
tgaaacaatgatatgcagtgataccgat------------gaagaggtccaagagaacaaagaagttaaacgtgacttttcttatggtgaaga |
416 |
Q |
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| T |
13356215 |
tg--ataatgatatgtagtgataatgatgataacaatgaagaagaggtccaagagaaaaacgaagttaaacgtgtcttttctcagggtgaaga |
13356125 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 250 - 320
Target Start/End: Complemental strand, 12033879 - 12033809
Alignment:
| Q |
250 |
tctttcacacaaaacagaaatgagagaatgacgaaagctgatgccttttctgcaagacgaaacatatatta |
320 |
Q |
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||||||||||| |||| ||||||| |||| || |||| |||||| |||||||||||| |||| |||||||| |
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| T |
12033879 |
tctttcacacataacacaaatgagtgaataaccaaagttgatgcattttctgcaagaagaaatatatatta |
12033809 |
T |
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