View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16186_low_2 (Length: 311)
Name: NF16186_low_2
Description: NF16186
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16186_low_2 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 236; Significance: 1e-130; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 50 - 293
Target Start/End: Original strand, 42257876 - 42258119
Alignment:
| Q |
50 |
catcccaagtgtcagaaagtaggactaaagagaggccaagtacacagagtgttcctccacataactgccatagggaatatcttgtgccaaggaagatcca |
149 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
42257876 |
catcccaagtgtcagaaaataggactaaagagaggccaagtacacagagtgttcctccacataactgccatagggaatatcttgtaccaaggaagatcca |
42257975 |
T |
|
| Q |
150 |
tgtgagtagaattgcccaaggtactgtccaacagtccagtaatgttacactagtaactgaagtatactgatatgctttgataactgcatacaaagccaga |
249 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42257976 |
tgtgagtagaattgcccaaggtactgtccaacagtccagtaatgttacactagtaactgaagtatactgatatgctttgataactgcatacaaagccaga |
42258075 |
T |
|
| Q |
250 |
ggcagcataatgctaaatcaaaattaattaaaatccacatatat |
293 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42258076 |
ggcagcataatgctaaatcaaaattaattaaaatccacatatat |
42258119 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 50 - 293
Target Start/End: Original strand, 42263375 - 42263618
Alignment:
| Q |
50 |
catcccaagtgtcagaaagtaggactaaagagaggccaagtacacagagtgttcctccacataactgccatagggaatatcttgtgccaaggaagatcca |
149 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
42263375 |
catcccaagtgtcagaaaataggactaaagagaggccaagtacacagagtgttcctccacataactgccatagggaatatcttgtaccaaggaagatcca |
42263474 |
T |
|
| Q |
150 |
tgtgagtagaattgcccaaggtactgtccaacagtccagtaatgttacactagtaactgaagtatactgatatgctttgataactgcatacaaagccaga |
249 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42263475 |
tgtgagtagaattgcccaaggtactgtccaacagtccagtaatgttacactagtaactgaagtatactgatatgctttgataactgcatacaaagccaga |
42263574 |
T |
|
| Q |
250 |
ggcagcataatgctaaatcaaaattaattaaaatccacatatat |
293 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42263575 |
ggcagcataatgctaaatcaaaattaattaaaatccacatatat |
42263618 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University