View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16187_high_5 (Length: 319)
Name: NF16187_high_5
Description: NF16187
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16187_high_5 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 73; Significance: 2e-33; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 35443321 - 35443393
Alignment:
| Q |
1 |
tacctggtcaacatcttgacgagtaataagagtatgcattgcggatccacttgacgtatcgcaaatattagag |
73 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35443321 |
tacctggtcaacatcttgacgagtaataagagtatgcattgcggatccacttgacgtatcgcaaatattagag |
35443393 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 232 - 303
Target Start/End: Original strand, 35443538 - 35443609
Alignment:
| Q |
232 |
ataaaattatatattcaaggtacaaaatcaaattatttgactttttgaataaataacatttttatttagata |
303 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
35443538 |
ataaaattatatattcaatgtacaaaatcaaattatttaactttttgaataaataacatttttatttagata |
35443609 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University