View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16187_high_7 (Length: 314)
Name: NF16187_high_7
Description: NF16187
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16187_high_7 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 167; Significance: 2e-89; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 108 - 314
Target Start/End: Original strand, 34164515 - 34164719
Alignment:
| Q |
108 |
ggttattaattacaatattttctaatgtannnnnnngacaatgtatgttaaagatatattcaactttccaactttcagttgttcatgacttgtgcctgtt |
207 |
Q |
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| T |
34164515 |
ggttattaattacaatattttctaatgtatttttttgacaatgtatgttgaagatatattcaactttccaactttcagttgttcatgacttgtgcctgtt |
34164614 |
T |
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| Q |
208 |
atatgccttaggacttctgctgttaggttgggtcaataaacatatatatattatgctttgataatatgtaccaccaccttaaaatatcaacattcataat |
307 |
Q |
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| T |
34164615 |
atatgccttaggacttctgctgttaggttgggtcaataaac--atatatattatgctttgataatatgtgccaccaccttaaaatatcaacattcataat |
34164712 |
T |
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| Q |
308 |
tcaaggc |
314 |
Q |
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||||||| |
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| T |
34164713 |
tcaaggc |
34164719 |
T |
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Target: chr8; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 5 - 59
Target Start/End: Original strand, 34164412 - 34164466
Alignment:
| Q |
5 |
gagaagcagagagctatggaatgcaagaaattccgaataaataatttcaatttag |
59 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34164412 |
gagaggcagagagctatggaatgcaagaaattccgaataaataatttcaatttag |
34164466 |
T |
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