View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16187_low_1 (Length: 501)
Name: NF16187_low_1
Description: NF16187
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16187_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 454; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 454; E-Value: 0
Query Start/End: Original strand, 15 - 489
Target Start/End: Original strand, 43017059 - 43017529
Alignment:
| Q |
15 |
cacagacaacggacacaacaaagacactaacatgttgaaacaattaattctacacctgcataatcgagttcatctcctctaaatgtgaaacaaaacatgg |
114 |
Q |
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| T |
43017059 |
cacagacaacggacacaacaaagacactaacatgttgaaacaattaattctacacctgcataatcgagttcatctcctctaaatgtgaaacaaaacatgg |
43017158 |
T |
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| Q |
115 |
actaattaatacttccgatgattaaatatatgattggggaggtctaccaaaacaacattgaccttatcaccttgaaatcctcgttccactactctttaaa |
214 |
Q |
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| T |
43017159 |
actaat----acttccgatgattaaatatatgattggggaggtctaccaaaacaacattgaccttatcaccttgaaatcctcgttccactactctttaaa |
43017254 |
T |
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| Q |
215 |
ccctacaaactttaccctcccaatcctcgctccacctttgaaaacaagaataagagagtgatcaagtaaacttatttgaatagtgttgaagaatttaagt |
314 |
Q |
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| T |
43017255 |
ccctacaaactttaccctcccaatcctcgctccacctttgaaaacaagaataagagagtgatcaagtaaacttatttgaatagtgttgaagaatttaagt |
43017354 |
T |
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| Q |
315 |
aaacattcaaaataataaatcatcacataaacctgagattacataacaagtcgaatttatctcagaggtcacaggagatgtaaccaagaatagaagaaaa |
414 |
Q |
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| T |
43017355 |
aaacattcaaaataataaatcatcacataaacctgagattacataacaagtcgaatttatctcagaggtcacaggagatgtaaccaagaatagaagaaaa |
43017454 |
T |
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| Q |
415 |
ttggaagaggaaatggttttcttgtttgttgcttatatatcatttttgtgttttgcatgcacaatgcagcttttg |
489 |
Q |
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| T |
43017455 |
ttggaagaggaaatggttttcttgtttgttgcttatatatcatttttgtgttttgcatgcacaattcagcttttg |
43017529 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 315 - 442
Target Start/End: Original strand, 35057106 - 35057230
Alignment:
| Q |
315 |
aaacattcaaaataataaatcatcacataaacctgagattacataacaagtcgaatttatctcagaggtcacaggagatgtaaccaagaatagaagaaaa |
414 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||| || ||||||||| |||| |||| |||||||||||||||||| |||||| |
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| T |
35057106 |
aaacattcaaaataataaatcatcacataaacctgagattacagaacaaatcaaatttatcttagagatcactggagatgtaaccaagaat---agaaaa |
35057202 |
T |
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| Q |
415 |
ttggaagaggaaatggttttcttgtttg |
442 |
Q |
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| T |
35057203 |
ttggaagaggaaatggttttcttgtttg |
35057230 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 252 - 311
Target Start/End: Original strand, 35056999 - 35057058
Alignment:
| Q |
252 |
ttgaaaacaagaataagagagtgatcaagtaaacttatttgaatagtgttgaagaattta |
311 |
Q |
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| T |
35056999 |
ttgaaaacaaaaataagagagagatcaagtaaacttatttgaatagtgttgaataattta |
35057058 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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