View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16188_low_2 (Length: 373)
Name: NF16188_low_2
Description: NF16188
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16188_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 244; Significance: 1e-135; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 1 - 353
Target Start/End: Complemental strand, 4860921 - 4860563
Alignment:
| Q |
1 |
gtggattgaatagaaagagtagggtgttaattctccgagtgctacatgctgttgggggccgtagggaatgcttatttgggccccctgcatgcagtgtcaa |
100 |
Q |
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| T |
4860921 |
gtggattgaatagaaagagtagggtgttaattctccgagtgctacatgctgttgggggccgtagggattgcttatttgggccccctgcatgcagtgtcaa |
4860822 |
T |
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| Q |
101 |
atcagcttcgccctagatacgttgccagctagctagctagctactatatcaactctatccttaacattgtgtttctttcttggacatattttgggttagt |
200 |
Q |
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| T |
4860821 |
atcagcttcaccctagatacgttgccagctagcta----gctactatatcaactctatccttaacattatttttctttcttggacatattttgggttagt |
4860726 |
T |
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| Q |
201 |
catcttaagaaatcaactatgttcaatgacatcaattttgtgtcgatcaagtaatctatttct----------gcattttaaatgtgaaaaattagatgt |
290 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||| ||||||||| ||||||| | | ||||||||||||||||||||||| | |
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| T |
4860725 |
catcttaagaaatcaactatgttcaatgacatcaattttatgttgatcaagtactctatttgttggattttacgtattttaaatgtgaaaaattagatat |
4860626 |
T |
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| Q |
291 |
ttagagtttaaatctcagttcttatg-acatcaatttagataattcaattatataaattattga |
353 |
Q |
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|||||||||||||||||||||||||| | || ||||| ||||||||||||||||||||||||| |
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| T |
4860625 |
ttagagtttaaatctcagttcttatgtatat-tatttaaataattcaattatataaattattga |
4860563 |
T |
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