View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16189_high_1 (Length: 416)
Name: NF16189_high_1
Description: NF16189
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16189_high_1 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 340; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 10 - 394
Target Start/End: Complemental strand, 36255760 - 36255364
Alignment:
| Q |
10 |
gagatgaacattctaaggagaattaaccatgccaacattacaaaactatctgggttctgtgtacacaaatgaaatacatcttttctatgagtttactgaa |
109 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
36255760 |
gagatgaacattctaaggagaattaaccacgccaacattacaaaactatctgggttttgtgtacacaaatgaaatacatcttttctacgagtttactgaa |
36255661 |
T |
|
| Q |
110 |
aacggttctcttgataattgtttcattttagcaagtgcttaaactctgtggctctaacttggaagcaaagagttcagattgctcagaatttgctgatgct |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36255660 |
aacggttctcttgataattgtttcattttagcaagtgcttaaactctgtggctctaacttggaagcaaagagttcagattgctcagaatttgctgatgct |
36255561 |
T |
|
| Q |
210 |
ttgaatcacctccacatatccataagaattttaattagcatcttaacatatcatttaatcacatgacatgactactattattaaaaggaa---------- |
299 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36255560 |
ttgaatcacctccacatatccataagaattttaattaccatcttaacatatcatttaatcacatgacatgactactattattaaaaggaaaggagaactt |
36255461 |
T |
|
| Q |
300 |
--aaatgatgctgtgtgacctttgtcttgctgatagttcaacctcaagcacaaatcctaaatttttcacattttccatttctacacctatgagactt |
394 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36255460 |
ttaaatgatgctgtgtgacctttgtcttgctgatagttcaacctcaagcacaaatcctaaatttttcacattttccatttctacacctatgagactt |
36255364 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 10 - 225
Target Start/End: Complemental strand, 36263063 - 36262844
Alignment:
| Q |
10 |
gagatgaacattctaaggagaattaaccatgccaacattacaaaactatctgggttctgtgtacacaaatgaaatacat--cttttctatgagtttactg |
107 |
Q |
| |
|
||||| || |||||||||||||| |||||||||||||| |||| | |||||| || ||||||||||| ||| |||| ||| | ||||||||| | | |
|
|
| T |
36263063 |
gagatcaatattctaaggagaatcaaccatgccaacataacaaggatctctgggctcagtgtacacaaaggaagcacatatcttgtttatgagtttgccg |
36262964 |
T |
|
| Q |
108 |
aaaacggttctcttgataattgt-ttcattttagcaagtgcttaaactctgtggctctaacttggaagcaaagagttcagattgctcagaat-ttgctga |
205 |
Q |
| |
|
|||| |||||||||||| |||| |||| |||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||| || | || || |
|
|
| T |
36262963 |
aaaatggttctcttgatgattggattcactttagcaagtgcataaactctgtggctctgacttggaagcaaagagttcagattgctcaggatgtggcgga |
36262864 |
T |
|
| Q |
206 |
tgctttgaatcacctccaca |
225 |
Q |
| |
|
|||||||||| |||| |||| |
|
|
| T |
36262863 |
tgctttgaattaccttcaca |
36262844 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University