View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16189_high_2 (Length: 371)

Name: NF16189_high_2
Description: NF16189
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16189_high_2
NF16189_high_2
[»] chr6 (2 HSPs)
chr6 (15-353)||(9820241-9820600)
chr6 (57-353)||(9825921-9826223)
[»] chr3 (8 HSPs)
chr3 (224-275)||(9595048-9595099)
chr3 (222-252)||(759127-759157)
chr3 (222-275)||(771953-772006)
chr3 (222-275)||(2455417-2455470)
chr3 (226-275)||(2474701-2474750)
chr3 (226-267)||(13497787-13497828)
chr3 (226-266)||(23231424-23231464)
chr3 (223-275)||(43991584-43991636)
[»] scaffold1004 (1 HSPs)
scaffold1004 (222-274)||(1723-1775)
[»] scaffold0760 (1 HSPs)
scaffold0760 (222-274)||(4218-4270)
[»] chr5 (4 HSPs)
chr5 (224-252)||(20292556-20292584)
chr5 (224-252)||(20301004-20301032)
chr5 (224-252)||(20305417-20305445)
chr5 (224-252)||(20309821-20309849)


Alignment Details
Target: chr6 (Bit Score: 219; Significance: 1e-120; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 15 - 353
Target Start/End: Complemental strand, 9820600 - 9820241
Alignment:
Q  15 atgaaccacaatctcattaaaaagtcaaagaacacccgatcggacttctctctttatcctctgcgcacaatcttcaacggttgcaccgttgacga---tg 111  Q
    |||||||||||||||||| || |||||||||||| || || | ||||||||||||||| |||||||||||||||||| |||||||||| ||||||   ||    
T  9820600 atgaaccacaatctcattcaacagtcaaagaacaacccattgtacttctctctttatcatctgcgcacaatcttcaatggttgcaccgatgacgacgatg 9820501  T
Q  112 ccacagagatcacattccctctccacggtgaaaaatattttgctaatggtattctcatagttgcctcttatgacggaatcctttgtttagcgtggcctta 211  Q
    |||||||||| ||||||||||||||||||||||| | |||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  9820500 ccacagagataacattccctctccacggtgaaaactgttttactaatggtattctcatagtttcctcttatgacggaatcctttgtttagcgtggcctta 9820401  T
Q  212 tggtgaaatcgctgttttgtggaacccttccattagaaaatataacatattgcctcgtttggaagaaaatcgacgcttcaggtatacatatgtt------ 305  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||| |||||||||||          
T  9820400 tggtgaaatcgctgttttgtggaacccttccattagaaaatataacatattgcctcctttggaagaaaatcaacgcttcaggaatacatatgttcacagg 9820301  T
Q  306 ------------cacaccgtgtatggctacaccgtatatggctttggctatgataatata 353  Q
                ||||||||||||||||||||||||||||||||||||||||||||||||    
T  9820300 aatacatatgttcacaccgtgtatggctacaccgtatatggctttggctatgataatata 9820241  T

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Target: chr6; HSP #2
Raw Score: 151; E-Value: 8e-80
Query Start/End: Original strand, 57 - 353
Target Start/End: Complemental strand, 9826223 - 9825921
Alignment:
Q  57 gacttctctctttatcctctgcgcacaatcttcaacggttgcaccgttgacgatgccacagagatcacattccctctccacggtgaaaaatattttgcta 156  Q
    ||||||||| ||||||||||||| ||| |||||| | ||||||||     ||| |||||||||||||||||||||||||| |||||||| ||||||| |     
T  9826223 gacttctctatttatcctctgcgaacattcttcaccagttgcaccaccatcgacgccacagagatcacattccctctccatggtgaaaactattttgatg 9826124  T
Q  157 atggtattctcatagttgcctcttatgacggaatcctttgtttagc---gtggccttatggtgaaa---tcgctgttttgtggaacccttccattagaaa 250  Q
    || |||||  ||||||||||| ||  ||||||||| |||||||| |   | |||||||  ||||||   |||||||||||||||||||||||||| ||||    
T  9826123 atcgtattagcatagttgccttttgcgacggaatcttttgtttaactgtggggccttaccgtgaaagcatcgctgttttgtggaacccttccattcgaaa 9826024  T
Q  251 atataacatattgcctcgtttggaagaaaatcgacgcttcaggtatacatatgttcacaccgtgtatggctacaccgtatatggctttggctatgataat 350  Q
    ||||||||||||||| | |||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9826023 atataacatattgccccctttggaagaaaatcaacgcttcagggatacatatgttcacaccgtgtatggctacaccgtatatggctttggctatgataat 9825924  T
Q  351 ata 353  Q
    |||    
T  9825923 ata 9825921  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000003; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 224 - 275
Target Start/End: Complemental strand, 9595099 - 9595048
Alignment:
Q  224 tgttttgtggaacccttccattagaaaatataacatattgcctcgtttggaa 275  Q
    ||||||||||||||||||||||||||||| |||  ||||||||| |||||||    
T  9595099 tgttttgtggaacccttccattagaaaatttaagttattgcctcctttggaa 9595048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 222 - 252
Target Start/End: Complemental strand, 759157 - 759127
Alignment:
Q  222 gctgttttgtggaacccttccattagaaaat 252  Q
    |||||||||||||||||||||||||||||||    
T  759157 gctgttttgtggaacccttccattagaaaat 759127  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 222 - 275
Target Start/End: Complemental strand, 772006 - 771953
Alignment:
Q  222 gctgttttgtggaacccttccattagaaaatataacatattgcctcgtttggaa 275  Q
    ||||||||||||||||||||||||  |||||  || |||||||||| |||||||    
T  772006 gctgttttgtggaacccttccattcaaaaattcaagatattgcctcctttggaa 771953  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 222 - 275
Target Start/End: Original strand, 2455417 - 2455470
Alignment:
Q  222 gctgttttgtggaacccttccattagaaaatataacatattgcctcgtttggaa 275  Q
    |||||||||||||||||||||||| || |||  || |||||||||| |||||||    
T  2455417 gctgttttgtggaacccttccattggagaattcaagatattgcctcctttggaa 2455470  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 226 - 275
Target Start/End: Original strand, 2474701 - 2474750
Alignment:
Q  226 ttttgtggaacccttccattagaaaatataacatattgcctcgtttggaa 275  Q
    |||||||||||||||||||| |||||| |||  ||||||||| |||||||    
T  2474701 ttttgtggaacccttccattggaaaatttaagttattgcctcctttggaa 2474750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 226 - 267
Target Start/End: Original strand, 13497787 - 13497828
Alignment:
Q  226 ttttgtggaacccttccattagaaaatataacatattgcctc 267  Q
    |||||||||||||||||||||||||||  || ||||||||||    
T  13497787 ttttgtggaacccttccattagaaaattcaagatattgcctc 13497828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 226 - 266
Target Start/End: Complemental strand, 23231464 - 23231424
Alignment:
Q  226 ttttgtggaacccttccattagaaaatataacatattgcct 266  Q
    |||||||||||||||||||||||||||  || |||||||||    
T  23231464 ttttgtggaacccttccattagaaaatccaaaatattgcct 23231424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 223 - 275
Target Start/End: Original strand, 43991584 - 43991636
Alignment:
Q  223 ctgttttgtggaacccttccattagaaaatataacatattgcctcgtttggaa 275  Q
    |||||||||||||||||||||||| || ||| || || ||||||| |||||||    
T  43991584 ctgttttgtggaacccttccattataagatacaatatgttgcctcctttggaa 43991636  T

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Target: scaffold1004 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold1004
Description:

Target: scaffold1004; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 222 - 274
Target Start/End: Original strand, 1723 - 1775
Alignment:
Q  222 gctgttttgtggaacccttccattagaaaatataacatattgcctcgtttgga 274  Q
    |||||||||||||||||||||||||||| ||  || || ||||||| ||||||    
T  1723 gctgttttgtggaacccttccattagaacattcaagattttgcctcctttgga 1775  T

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Target: scaffold0760 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0760
Description:

Target: scaffold0760; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 222 - 274
Target Start/End: Original strand, 4218 - 4270
Alignment:
Q  222 gctgttttgtggaacccttccattagaaaatataacatattgcctcgtttgga 274  Q
    |||||||||||||||||||||||||||| ||  || || ||||||| ||||||    
T  4218 gctgttttgtggaacccttccattagaacattcaagattttgcctcctttgga 4270  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000005; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 224 - 252
Target Start/End: Original strand, 20292556 - 20292584
Alignment:
Q  224 tgttttgtggaacccttccattagaaaat 252  Q
    |||||||||||||||||||||||||||||    
T  20292556 tgttttgtggaacccttccattagaaaat 20292584  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 224 - 252
Target Start/End: Original strand, 20301004 - 20301032
Alignment:
Q  224 tgttttgtggaacccttccattagaaaat 252  Q
    |||||||||||||||||||||||||||||    
T  20301004 tgttttgtggaacccttccattagaaaat 20301032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 224 - 252
Target Start/End: Original strand, 20305417 - 20305445
Alignment:
Q  224 tgttttgtggaacccttccattagaaaat 252  Q
    |||||||||||||||||||||||||||||    
T  20305417 tgttttgtggaacccttccattagaaaat 20305445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 224 - 252
Target Start/End: Original strand, 20309821 - 20309849
Alignment:
Q  224 tgttttgtggaacccttccattagaaaat 252  Q
    |||||||||||||||||||||||||||||    
T  20309821 tgttttgtggaacccttccattagaaaat 20309849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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