View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1618_high_1 (Length: 494)
Name: NF1618_high_1
Description: NF1618
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1618_high_1 |
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Alignment Details
Target: chr6 (Bit Score: 422; Significance: 0; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 422; E-Value: 0
Query Start/End: Original strand, 45 - 486
Target Start/End: Complemental strand, 4178082 - 4177641
Alignment:
| Q |
45 |
atcgtcacatcatagaaaatgttagactttgatcgtaactatttttaatgtcacacacatgattgattttatttatatcatgcaggagacactaccttga |
144 |
Q |
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| T |
4178082 |
atcgtcacatcataaaaaatgttagactttgatcgtaactatttataatgtcacacacatgattgattttatttatatcatgcaggagacactaccttga |
4177983 |
T |
|
| Q |
145 |
atttcctcctgaagtaaactttaagaagctgttgcaatctaataagcacttattagagttgagccaaagaccttttccaagtttggattcttcatttttt |
244 |
Q |
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| T |
4177982 |
atttcctcctaaagtaaactttaagaagctgttgcaatctaataagcacttattagagttgagccaaagaccttttccaagtttggattcttcatttttt |
4177883 |
T |
|
| Q |
245 |
ggtataccattaattacaccaccatctctgatatattcaactcctccagtatcagtcaataatcatttccataatccttgccctaattttttgtcagctc |
344 |
Q |
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| T |
4177882 |
ggtataccattaattacaccaccatctctgatatattcaactcctccagtatcagtcaataatcatttccataatccttgccctaattttttgtcagctc |
4177783 |
T |
|
| Q |
345 |
ccaacacttgttagaattaatcaatgagcagtgacataaatgttttagacaccttgtttagcaagtgttgtagacaaaaatattgtatcaaattatgtaa |
444 |
Q |
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| T |
4177782 |
ccaacacttgttagaattaatcaatgagcagtgacataaatgttttagacaccttgtttagcaagtgttgtagacaaaaatattgtatcaaattatgtaa |
4177683 |
T |
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| Q |
445 |
tattatgtctgggttttggaatttttgtgtgtatttcatctc |
486 |
Q |
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| T |
4177682 |
tattatgtctgggttttggaatttttgtgtctatttcttctc |
4177641 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 123 - 480
Target Start/End: Original strand, 4078045 - 4078409
Alignment:
| Q |
123 |
catgcaggagacactaccttgaatttcctcctgaagtaaactttaagaagctgttgcaatctaataagcacttattagagttgagccaaagaccttttcc |
222 |
Q |
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| T |
4078045 |
catgcaggagacactatcttgaatttcctcctggagtaaactttaagaagctgttgcaatctaataagcacttattagagttgagccaaagaccttttcc |
4078144 |
T |
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| Q |
223 |
aagtttggattcttcattttttggtataccattaattacaccaccatctctgatatattcaactcctccag----tatcagtcaataatcatttccataa |
318 |
Q |
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| T |
4078145 |
aagtttggattcttcattttttggtataccattaattacaccaccatctctgatatattcaactcctccagtatatatcagtcaataatcatttccataa |
4078244 |
T |
|
| Q |
319 |
tccttgccctaattttttgtcagctcccaacacttgttagaattaatcaatgagcagtgacataaatgttttagacaccttgtttagcaagtgttgtaga |
418 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||| ||||||||||||||||||||||| | ||||||||||| |
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| T |
4078245 |
tccttgccctaattttttgtcagctcccaacacttgttacaattaatcaataagcagtgacagaaatgttttagacaccttgtttacctagtgttgtaga |
4078344 |
T |
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| Q |
419 |
caaaaatattgtatcaaatt-atgtaatatta--tgtctgggttttggaatttttgtgtgtattt |
480 |
Q |
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| T |
4078345 |
cagaaatattgtatcaaattgatgtaatattatttgtttgggttttggaatttttgtgtgtattt |
4078409 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 45 - 118
Target Start/End: Original strand, 4077924 - 4077997
Alignment:
| Q |
45 |
atcgtcacatcatagaaaatgttagactttgatcgtaactatttttaatgtcacacacatgattgattttattt |
118 |
Q |
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| T |
4077924 |
atcgtcacatcataaaaaatgttagactttgatcgtaactatttttaatgtcacacatatgattgattttattt |
4077997 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 26 - 98
Target Start/End: Original strand, 33657402 - 33657474
Alignment:
| Q |
26 |
acactatcgatcaatgataatcgtcacatcatagaaaatgttagactttgatcgtaactatttttaatgtcac |
98 |
Q |
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| T |
33657402 |
acactatcaatcaatcataaccgtcaaatcattgaaaatatttgactttaaccataactatttttaaagtcac |
33657474 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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