View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1618_high_5 (Length: 245)
Name: NF1618_high_5
Description: NF1618
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1618_high_5 |
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Alignment Details
Target: chr3 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 20 - 234
Target Start/End: Original strand, 47192191 - 47192405
Alignment:
| Q |
20 |
cgagcaaccttagtttcatccaaaagtgaaacaaactattcctcaggtttctataagttttatttcgacaacgacaatgctcttcgtcttctattcaaaa |
119 |
Q |
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| T |
47192191 |
cgagcaaccttagtttcatccaaaagtgaaacaaactattcctcaggtttctataagttttatttcgacaacgacaatgctcttcgtcttctattcaaaa |
47192290 |
T |
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| Q |
120 |
gtcctttgttatctagtgtctattggccatcaccttgggtattacctgttgatgcaggaagatcaacttataatgttactaaaatcgcgctactcgattc |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47192291 |
gtcctttgttatctagtgtctattggccatcaccttgggtattacctgttgatgcaggaagatcaacttataatgttactaaaatcgcgctactcgattc |
47192390 |
T |
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| Q |
220 |
ctttggccatttcat |
234 |
Q |
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||||||||||||||| |
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| T |
47192391 |
ctttggccatttcat |
47192405 |
T |
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