View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1618_low_2 (Length: 395)
Name: NF1618_low_2
Description: NF1618
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1618_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 364; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 1 - 380
Target Start/End: Complemental strand, 29936291 - 29935912
Alignment:
| Q |
1 |
tgatttctaaaatgataagtattttctacaaaccagctgatgaacttcgtcatgattcaaaagtttgggcaatggtatttgtagcggttggtgtggcatc |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
29936291 |
tgatttctaaaatgataagtattttctacaaaccagctgatgaacttcgtcatgattcaaaagtttgggcaatggtgtttgtagcggttggtgtggcatc |
29936192 |
T |
|
| Q |
101 |
attactggttattccatgtagatactacttttttggcattgctggaggaaaggtgatccaaagaatccgaaaaatgtgtttcgagaaagtagtttacatg |
200 |
Q |
| |
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|||||| ||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29936191 |
attactagttattccatgtagatactacttttttggcattgctggaggtaagttgatccaaagaatccgaaaaatgtgtttcgagaaagtagtttacatg |
29936092 |
T |
|
| Q |
201 |
gaagtaaattggtttgatgaggttgagcattcaagcggagcacttggagcaaggctctccacagatgcagctttggttagagctctggttggggatgcac |
300 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29936091 |
gaagtaaattggtttgatgaggttgagcattcaagcggagcacttggagcaaggctctccacagatgcagctttggttagagctctggttggggatgcac |
29935992 |
T |
|
| Q |
301 |
ttggtctgttggctgaaaatattgctacatcaataactggcttggtaattgcttttgaagcgagctggcagcttgctttt |
380 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29935991 |
ttggtctgttggctgaaaatattgctacatcaataactggcttggtaattgcttttgaagcgagctggcagcttgctttt |
29935912 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 4 - 380
Target Start/End: Original strand, 51146743 - 51147119
Alignment:
| Q |
4 |
tttctaaaatgataagtattttctacaaaccagctgatgaacttcgtcatgattcaaaagtttgggcaatggtatttgtagcggttggtgtggcatcatt |
103 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||| |||||||||||| |
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| T |
51146743 |
tttctaaaatgataagtactttctacaaaccagctgatgaacttcgtcatgattcaaaagtttgggcaatagtgtttgtagcggttgctgtggcatcatt |
51146842 |
T |
|
| Q |
104 |
actggttattccatgtagatactacttttttggcattgctggaggaaaggtgatccaaagaatccgaaaaatgtgtttcgagaaagtagtttacatggaa |
203 |
Q |
| |
|
||| ||||||||||||||| ||||||||||||| |||||||||| ||| |||||||||| ||||||||| ||||||| |||||||||||| |||||||| |
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| T |
51146843 |
actcattattccatgtagattctacttttttggcgttgctggaggtaagttgatccaaaggatccgaaaattgtgttttgagaaagtagttcacatggaa |
51146942 |
T |
|
| Q |
204 |
gtaaattggtttgatgaggttgagcattcaagcggagcacttggagcaaggctctccacagatgcagctttggttagagctctggttggggatgcacttg |
303 |
Q |
| |
|
|||| ||||||||| || ||||||||||||||||||||||||||||||||||||||||| |||||||| | ||||||||||| ||||||||||| |||| |
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| T |
51146943 |
gtaagttggtttgacgatgttgagcattcaagcggagcacttggagcaaggctctccactgatgcagcatcagttagagctctagttggggatgcccttg |
51147042 |
T |
|
| Q |
304 |
gtctgttggctgaaaatattgctacatcaataactggcttggtaattgcttttgaagcgagctggcagcttgctttt |
380 |
Q |
| |
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|| || ||| | |||||||||||||| |||| |||| |||||||||||||| ||||||||||||| ||||||||| |
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| T |
51147043 |
gtttgctggttcaaaatattgctacaataatagttggcatggtaattgcttttcaagcgagctggcaacttgctttt |
51147119 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 1 - 380
Target Start/End: Original strand, 51157879 - 51158258
Alignment:
| Q |
1 |
tgatttctaaaatgataagtattttctacaaaccagctgatgaacttcgtcatgattcaaaagtttgggcaatggtatttgtagcggttggtgtggcatc |
100 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||| || ||||| || |||| ||||||| | |
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| T |
51157879 |
tgatttctaaaatgataaatattttctacaaaccagctcatgaacttcgtcatgattcaaaagtttgggcaattgtgtttgtggccgttgctgtggcaac |
51157978 |
T |
|
| Q |
101 |
attactggttattccatgtagatactacttttttggcattgctggaggaaaggtgatccaaagaatccgaaaaatgtgtttcgagaaagtagtttacatg |
200 |
Q |
| |
|
|||||| ||||||||||||||| |||||||||||| ||||||| || ||| |||| ||||| ||||| || |||||||| |||||||||||| ||||| |
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|
| T |
51157979 |
attactcattattccatgtagattctacttttttggtgttgctggtggtaagttgatacaaaggatccggaatatgtgttttgagaaagtagttcacatg |
51158078 |
T |
|
| Q |
201 |
gaagtaaattggtttgatgaggttgagcattcaagcggagcacttggagcaaggctctccacagatgcagctttggttagagctctggttggggatgcac |
300 |
Q |
| |
|
||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||| |
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|
| T |
51158079 |
gaagtaagttggtttgatgaggctgagcattcaagcggagcacttggagcaaggctctccactgatgcagcttcagttagagctctggttggggatgcac |
51158178 |
T |
|
| Q |
301 |
ttggtctgttggctgaaaatattgctacatcaataactggcttggtaattgcttttgaagcgagctggcagcttgctttt |
380 |
Q |
| |
|
||||| || ||| | |||||||||||||| ||||| |||||||||||||| ||||| ||||||||||||||||||||||| |
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| T |
51158179 |
ttggtttgctggttcaaaatattgctacagcaatagctggcttggtaatttcttttcaagcgagctggcagcttgctttt |
51158258 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 4 - 376
Target Start/End: Original strand, 51200676 - 51201048
Alignment:
| Q |
4 |
tttctaaaatgataagtattttctacaaaccagctgatgaacttcgtcatgattcaaaagtttgggcaatggtatttgtagcggttggtgtggcatcatt |
103 |
Q |
| |
|
|||| |||||||| |||||||||||| | |||||||| ||||||||||| ||||||||||||||||| | |||||||| | | | | ||||||||| || |
|
|
| T |
51200676 |
tttcgaaaatgattagtattttctacgagccagctgacgaacttcgtcacgattcaaaagtttgggcgctagtatttgttgggctcgctgtggcatcgtt |
51200775 |
T |
|
| Q |
104 |
actggttattccatgtagatactacttttttggcattgctggaggaaaggtgatccaaagaatccgaaaaatgtgtttcgagaaagtagtttacatggaa |
203 |
Q |
| |
|
| | || |||||||||||| |||||||||||||||||||||||| ||| ||||| |||| ||||| ||||||||||| ||||| |||||| | |||||| |
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|
| T |
51200776 |
attcatttttccatgtagattctacttttttggcattgctggaggtaagttgatcaaaaggatccggaaaatgtgttttgagaaggtagttcatatggaa |
51200875 |
T |
|
| Q |
204 |
gtaaattggtttgatgaggttgagcattcaagcggagcacttggagcaaggctctccacagatgcagctttggttagagctctggttggggatgcacttg |
303 |
Q |
| |
|
|| | ||||||||||| | |||||||||||| || ||| |||||||||||||||| ||||||||||||| ||| ||||| ||||||| |||||||| | |
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|
| T |
51200876 |
gtgagctggtttgatgaagctgagcattcaagtggcgcaattggagcaaggctctctacagatgcagcttcagttcgagctttggttggtgatgcactcg |
51200975 |
T |
|
| Q |
304 |
gtctgttggctgaaaatattgctacatcaataactggcttggtaattgcttttgaagcgagctggcagcttgc |
376 |
Q |
| |
|
|| || ||| |||||||||||| ||| | ||| |||||||||||||||||||| ||| |||||||||||||| |
|
|
| T |
51200976 |
gtttgctggttgaaaatattgcaacagctatagctggcttggtaattgcttttacagctagctggcagcttgc |
51201048 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 134 - 234
Target Start/End: Original strand, 34586206 - 34586306
Alignment:
| Q |
134 |
tggcattgctggaggaaaggtgatccaaagaatccgaaaaatgtgtttcgagaaagtagtttacatggaagtaaattggtttgatgaggttgagcattca |
233 |
Q |
| |
|
||||||||||||||| ||| ||||| ||| || || ||||||||||| ||||| ||||||||||||||||||| |||||||| ||| |||||||||| |
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|
| T |
34586206 |
tggcattgctggaggtaagttgatcagaaggattcggaaaatgtgttttgagaaggtagtttacatggaagtaagttggtttgttgaatctgagcattca |
34586305 |
T |
|
| Q |
234 |
a |
234 |
Q |
| |
|
| |
|
|
| T |
34586306 |
a |
34586306 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 173 - 301
Target Start/End: Complemental strand, 49736102 - 49735974
Alignment:
| Q |
173 |
aatgtgtttcgagaaagtagtttacatggaagtaaattggtttgatgaggttgagcattcaagcggagcacttggagcaaggctctccacagatgcagct |
272 |
Q |
| |
|
|||||| || |||||| || || ||||||||||| ||||||||| | | |||| ||||||| || |||||||| |||||||| || || ||||| ||| |
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|
| T |
49736102 |
aatgtgctttgagaaaataattcacatggaagtaggatggtttgataaagctgagaattcaagtggtgcacttggtgcaaggctgtcaaccgatgctgct |
49736003 |
T |
|
| Q |
273 |
ttggttagagctctggttggggatgcact |
301 |
Q |
| |
|
| | || || || |||||||||||||||| |
|
|
| T |
49736002 |
tcgattcgaactttggttggggatgcact |
49735974 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 209 - 305
Target Start/End: Original strand, 36287333 - 36287429
Alignment:
| Q |
209 |
ttggtttgatgaggttgagcattcaagcggagcacttggagcaaggctctccacagatgcagctttggttagagctctggttggggatgcacttggt |
305 |
Q |
| |
|
|||||||||||| |||| ||||||| || ||||||| ||||| ||| ||||| |||| ||| ||||||| | |||||||||||||||||||| |
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|
| T |
36287333 |
ttggtttgatgaaactgagaattcaagtggtgcacttgcagcaaagctgtccaccaatgctgctacagttagaggtttggttggggatgcacttggt |
36287429 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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