View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1618_low_4 (Length: 249)
Name: NF1618_low_4
Description: NF1618
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1618_low_4 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 202; Significance: 1e-110; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 13509067 - 13509304
Alignment:
| Q |
1 |
aaatattcatggttgtatactaaaatacatagcaacaaacaacatcaaaatgtggaattgattatttgattaagcttactcggaaactctttcgtagata |
100 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13509067 |
aaatgttcatggttgtatactaaaatacatagcaacagacaacatcaaaatgtggaattgattatttgattaagcttactcggaaactctttcgtagata |
13509166 |
T |
|
| Q |
101 |
gatccaaacgaatcaacccaaaaaaccgtccattttgcctcaacccaggcggggtaataataattttttatgcaatgttgttgcagaaactgccgtgggg |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||| | ||||| |
|
|
| T |
13509167 |
gatccaaacgaatcaacccaaaaaaccgtccattttgccacaacccaggcggggtaataataattttttatgcaatgttgtagcagaaactgtcatgggg |
13509266 |
T |
|
| Q |
201 |
gtagtaaagtaaaagttaaattgattgaatgcgagaat |
238 |
Q |
| |
|
|| ||||| |||||||||||||||||||||| |||||| |
|
|
| T |
13509267 |
gttgtaaattaaaagttaaattgattgaatgtgagaat |
13509304 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 13598597 - 13598834
Alignment:
| Q |
1 |
aaatattcatggttgtatactaaaatacatagcaacaaacaacatcaaaatgtggaattgattatttgattaagcttactcggaaactctttcgtagata |
100 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13598597 |
aaatgttcatggttgtatactaaaatacatagcaacagacaacatcaaaatgtggaattgattatttgattaagcttactcggaaactctttcgtagata |
13598696 |
T |
|
| Q |
101 |
gatccaaacgaatcaacccaaaaaaccgtccattttgcctcaacccaggcggggtaataataattttttatgcaatgttgttgcagaaactgccgtgggg |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||| | ||||| |
|
|
| T |
13598697 |
gatccaaacgaatcaacccaaaaaaccgtccattttgccacaacccaggcggggtaataataattttttatgcaatgttgtagcagaaactgtcatgggg |
13598796 |
T |
|
| Q |
201 |
gtagtaaagtaaaagttaaattgattgaatgcgagaat |
238 |
Q |
| |
|
|| ||||| |||||||||||||||||||||| |||||| |
|
|
| T |
13598797 |
gttgtaaattaaaagttaaattgattgaatgtgagaat |
13598834 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University