View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16190_high_2 (Length: 614)
Name: NF16190_high_2
Description: NF16190
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16190_high_2 |
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| [»] chr3 (4 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 526; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 526; E-Value: 0
Query Start/End: Original strand, 14 - 614
Target Start/End: Complemental strand, 31353740 - 31353140
Alignment:
| Q |
14 |
agagggatatctcaggtattatgaaatatgtacttatcatcacatgatgaagacatggacaagaagcttgacaacaatgaaaggagcaatcatgtctcat |
113 |
Q |
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| T |
31353740 |
agagggatatctcgggtattatgaaatatgtacttataatcacatgatgaagacatggacaagaagcttgacaacaatgaaaggagcaatcatgtctcat |
31353641 |
T |
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| Q |
114 |
ttaacaactatatctgataattgtacaaaataaatttataatgagtttatgttgaattgattatttttgtataaaccgttaataaaattgtcatttatga |
213 |
Q |
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| T |
31353640 |
ttaacaactatatctgataattgtacaaaataaatttataatgagtttatgttgaattgattatttttgtataaaccgttaataaaattgtcaattatga |
31353541 |
T |
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| Q |
214 |
aggaaaaattatatccaacatttttagttattgatattggtgattgaagaacatcgtcaatctttacatactcaaaacagttactagtccgaagtttgtg |
313 |
Q |
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| T |
31353540 |
aggaaaaattatctccaacatttttagttattgatattggtgattgaagaacattgtcaatctttacatactc-aaacagttactagtccgaagtttgtg |
31353442 |
T |
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| Q |
314 |
aatgccttatgaagtacaactttgccccattgaaagcatgaagcatatgattttctccctcttactctgtcacatgctatgctatcaaaatcatagaagt |
413 |
Q |
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| T |
31353441 |
aatgccttatgaagtacaactttgccccattgaaagcatgaagcatatgattttctccatcttacactgtcatatgctatgctatcaaaatcatagaagt |
31353342 |
T |
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| Q |
414 |
ctgaacttcattttcaatatttagaccacaagtagactttgatatgagttcattatcttattgggagatatatgtagagaagaaatttgtgttatttctg |
513 |
Q |
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| T |
31353341 |
ctgaacttcattttcaatatttagaccacaagtagattttgatatgacttcattatcttattgggagatatatgtagcgaagaaatttgtgttatttctg |
31353242 |
T |
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| Q |
514 |
agccaaagatgataaaacctattttatgattcagttcacggtccttaataaacatgaaatt-gaagttgcatttgctcgtgatttatgaatagatatgaa |
612 |
Q |
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| T |
31353241 |
agccaaagatgataaaacctatattatgattcagttctcggtccttaaaaaacatgaaattagaagttgcctttgctcgtgatttatgaatagatatgaa |
31353142 |
T |
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| Q |
613 |
ac |
614 |
Q |
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| T |
31353141 |
ac |
31353140 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 358 - 614
Target Start/End: Complemental strand, 31363804 - 31363548
Alignment:
| Q |
358 |
atatgattttctccctcttactctgtcacatgctatgctatcaaaatcatagaagtctgaacttcattttcaatatttagaccacaagtagactttgata |
457 |
Q |
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| T |
31363804 |
atatgattttctccctcttactctgtcacatgctatgctatcaaaatcatagaagtctgaacttcattttcaatatttagaccacaagtagactttgata |
31363705 |
T |
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| Q |
458 |
tgagttcattatcttattgggagatatatgtagagaagaaatttgtgttatttctgagccaaagatgataaaacctattttatgattcagttcacggtcc |
557 |
Q |
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| T |
31363704 |
tgacttcattatcttattgggagatatatgtagagaagaaatttgtgttatttctgagccaaagatgataaaacctattttatgattcagttcacggtcc |
31363605 |
T |
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| Q |
558 |
ttaataaacatgaaattgaagttgcatttgctcgtgatttatgaatagatatgaaac |
614 |
Q |
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| T |
31363604 |
ttaataaacatgaaattgaagttgcatttgctcgtgatttatgaatagatatgaaac |
31363548 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 358 - 409
Target Start/End: Complemental strand, 31363959 - 31363908
Alignment:
| Q |
358 |
atatgattttctccctcttactctgtcacatgctatgctatcaaaatcatag |
409 |
Q |
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| T |
31363959 |
atatgattttctccctcttactctgtcacatgctatgctatcaaaatcatag |
31363908 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 14 - 75
Target Start/End: Complemental strand, 31343406 - 31343345
Alignment:
| Q |
14 |
agagggatatctcaggtattatgaaatatgtacttatcatcacatgatgaagacatggacaa |
75 |
Q |
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| T |
31343406 |
agagggatatctcgggtattatgaaatatgtacttataatcagatgatgaagacatggacaa |
31343345 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 230 - 288
Target Start/End: Complemental strand, 18542606 - 18542548
Alignment:
| Q |
230 |
aacatttttagttattgatattggtgattgaagaacatcgtcaatctttacatactcaa |
288 |
Q |
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| T |
18542606 |
aacatttttaactgttgatattggagattgaagagcatcatcaatctttacatgctcaa |
18542548 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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