View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16191_high_1 (Length: 334)
Name: NF16191_high_1
Description: NF16191
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16191_high_1 |
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| [»] scaffold0915 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 213; Significance: 1e-117; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 4 - 272
Target Start/End: Complemental strand, 26419929 - 26419662
Alignment:
| Q |
4 |
ctctcaatttctagaaagttttttctttaacacacaaaacttcctaaaaatacatgaaaaagacgaaattaccctcatcgatagttaactaccgctgaga |
103 |
Q |
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| T |
26419929 |
ctctcaatcgctagaaagttgtttctttgacacacaaaacttcctaaaaatacatgaaaaagacgaaattatcctcatcgatagtta-ctaccgttgaga |
26419831 |
T |
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| Q |
104 |
aaaaccggcagcagttaactaccattgacctagcggtagttaactagcactacattccttttttcaccctttcaccaactttctgatgctatgccttcat |
203 |
Q |
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| T |
26419830 |
aaaaccggcagcagttaactaccattggcctaacggtagttaactaacgctgcattccttttttcaccctttcaccaactttctgatgctatgccttcat |
26419731 |
T |
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| Q |
204 |
tattcaaggtcaattctatgcctattatcataaatgcatattaaataaacgttgattgtcatgaatata |
272 |
Q |
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| T |
26419730 |
tattcaaggtcaattctatgcctattatcataaatgcatattaaataaacgttgattgtcataaatata |
26419662 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 103 - 187
Target Start/End: Original strand, 26418667 - 26418752
Alignment:
| Q |
103 |
aaaaaccggcagcagttaactaccattgacct-agcggtagttaactagcactacattccttttttcaccctttcaccaactttct |
187 |
Q |
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| T |
26418667 |
aaaaatcggcagcagttaactatcgttgacttcagcggtagttaactaccgttgtattccttttttcatcatttcaccaactttct |
26418752 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 52; Significance: 9e-21; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 197 - 276
Target Start/End: Complemental strand, 10405762 - 10405683
Alignment:
| Q |
197 |
ccttcattattcaaggtcaattctatgcctattatcataaatgcatattaaataaacgttgattgtcatgaatatattca |
276 |
Q |
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| T |
10405762 |
ccttcattattcaaggtcaaagttatgcctattatcataaatgtatattaaatggacgatgattgtcatgaatatattca |
10405683 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 197 - 272
Target Start/End: Complemental strand, 10395151 - 10395076
Alignment:
| Q |
197 |
ccttcattattcaaggtcaattctatgcctattatcataaatgcatattaaataaacgttgattgtcatgaatata |
272 |
Q |
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| T |
10395151 |
ccttcattattcagggtcaatgttatgcctattatcataaatgcatttcatatggacgttgattgtcatgaatata |
10395076 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0915 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0915
Description:
Target: scaffold0915; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 44 - 126
Target Start/End: Complemental strand, 840 - 759
Alignment:
| Q |
44 |
ttcctaaaaatacatgaaaaagacgaaattaccctcatcgatagttaactaccgctgagaaaaaccggcagcagttaactacc |
126 |
Q |
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| T |
840 |
ttcctaaaaacacaagtaaatgacgaaattacccccaacggtagttaagtaccgttgggcaaa-ccggcagcagttaactacc |
759 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 44 - 126
Target Start/End: Complemental strand, 28985334 - 28985253
Alignment:
| Q |
44 |
ttcctaaaaatacatgaaaaagacgaaattaccctcatcgatagttaactaccgctgagaaaaaccggcagcagttaactacc |
126 |
Q |
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| T |
28985334 |
ttcctaaaaacacaagtaaatgacgaaattacccccaacggtagttaagtaccgttgggcaaa-ccggcagcagttaactacc |
28985253 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 85 - 130
Target Start/End: Original strand, 17714205 - 17714249
Alignment:
| Q |
85 |
tagttaactaccgctgagaaaaaccggcagcagttaactaccattg |
130 |
Q |
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| T |
17714205 |
tagttaactatagctga-aaaaaccggcagcagttaactaccattg |
17714249 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 85 - 130
Target Start/End: Original strand, 19015434 - 19015478
Alignment:
| Q |
85 |
tagttaactaccgctgagaaaaaccggcagcagttaactaccattg |
130 |
Q |
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| T |
19015434 |
tagttaactatagctga-aaaaaccggcagcagttaactaccattg |
19015478 |
T |
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