View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16191_high_2 (Length: 333)
Name: NF16191_high_2
Description: NF16191
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16191_high_2 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 173; Significance: 5e-93; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 173; E-Value: 5e-93
Query Start/End: Original strand, 71 - 333
Target Start/End: Complemental strand, 47856249 - 47855986
Alignment:
| Q |
71 |
gtacacatgcatcattagatttcaaactatattttcaaagcttagaacacattnnnnnnnncctacannnnnnn--gaatatttgaacccaaagatagga |
168 |
Q |
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| T |
47856249 |
gtacacatgcatcattagatttcaaactatattttcaaagcttagaacacattaaaaaaaccctacatttttttttgaatatttgaacccaaagatagga |
47856150 |
T |
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| Q |
169 |
cacgcgagaagattagagggtaagnnnnnnnnnttatcttttaaatcactatgtcctcttaatgatctcatctctgttatggctaattcataataatctc |
268 |
Q |
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| T |
47856149 |
cacgcgagaagattagagggtaagaaaaaaaa-ttatcttttaaatcactatggcctcttaatgatctcatctctgttatggctaattcataataatctc |
47856051 |
T |
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| Q |
269 |
atccctaccaagttctttattaaccaacgatatgattccagaaatttgtttatttgggggcaagt |
333 |
Q |
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| T |
47856050 |
atccctaccaagttctttattaaccaacgatatgattccagaaatttgtttatttgggggcaagt |
47855986 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 12 - 74
Target Start/End: Complemental strand, 47857773 - 47857710
Alignment:
| Q |
12 |
agagagatttaagat-acctaaaataggacaagaaacactccttttattgatggggtcacgtac |
74 |
Q |
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| T |
47857773 |
agagagatataagattacctaaaataggacaagaaacactccttttattgatggggtcacgtac |
47857710 |
T |
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